From 9c3d5c48694db1018d50aa85acad434f47e5ed0b Mon Sep 17 00:00:00 2001
From: "Suren A. Chilingaryan" <csa@suren.me>
Date: Thu, 13 Dec 2018 00:05:49 +0100
Subject: Initial import

---
 biomedisa/Dockerfile | 49 +++++++++++++++++++++++++++++++++++++++++++++++++
 1 file changed, 49 insertions(+)
 create mode 100644 biomedisa/Dockerfile

(limited to 'biomedisa/Dockerfile')

diff --git a/biomedisa/Dockerfile b/biomedisa/Dockerfile
new file mode 100644
index 0000000..6666be7
--- /dev/null
+++ b/biomedisa/Dockerfile
@@ -0,0 +1,49 @@
+#FROM nvidia/cuda:10.0-cudnn7-devel-ubuntu18.04
+FROM nvidia/cuda:9.0-cudnn7-devel-ubuntu16.04
+MAINTAINER Suren A. Chilingaryan <csa@suren.me>
+
+# Install Devel & Python
+RUN apt-get update -qq \
+ && apt-get install --no-install-recommends -y \
+    git pkg-config netcat supervisor \
+    telnet iputils-ping dnsutils \
+    python python-dev python-pip python-setuptools python-virtualenv python-wheel python-numpy python-scipy python-h5py python-yaml python-pydot python-matplotlib libopenblas-base
+
+# Install Keras + Tensor Flow
+ARG TENSORFLOW_VERSION=1.12.0
+ARG TENSORFLOW_DEVICE=gpu
+ARG TENSORFLOW_APPEND=_gpu
+
+ARG KERAS_VERSION=2.2.4
+ENV KERAS_BACKEND=tensorflow
+
+RUN pip --no-cache-dir install \
+    https://storage.googleapis.com/tensorflow/linux/${TENSORFLOW_DEVICE}/tensorflow${TENSORFLOW_APPEND}-${TENSORFLOW_VERSION}-cp27-none-linux_x86_64.whl
+
+RUN pip --no-cache-dir install --no-dependencies \
+    git+https://github.com/fchollet/keras.git@${KERAS_VERSION}
+
+ADD tests/ /root/tests
+
+# install dependencies from debian packages
+RUN apt-get install --no-install-recommends -y \
+    mc \
+    libsm6 libxrender-dev \
+    openmpi-bin openmpi-doc libopenmpi-dev \
+    python-gdcm python-mysqldb
+
+# upgrade pip
+RUN pip --no-cache-dir install --upgrade pip
+
+# install dependencies from python packages
+RUN pip --no-cache-dir install \
+    setuptools==39.1.0 numpy==1.14.5 tifffile==0.14.0 SimpleParse==2.1.1 redis==2.10.6 rq==0.12 \
+    scipy weave scikit-image opencv-python h5py pydicom Pillow django mpi4py pycuda
+
+COPY supervisor/*.conf /etc/
+COPY *-entrypoint.sh /
+COPY run-*.sh /
+ENTRYPOINT ["/docker-entrypoint.sh"]
+
+ENV BIOMEDISA_DEVICE=${TENSORFLOW_DEVICE}
+CMD /usr/bin/supervisord -c /etc/supervisord-${BIOMEDISA_DEVICE}.conf
-- 
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