summaryrefslogtreecommitdiffstats
path: root/include/astra/ArtAlgorithm.h
diff options
context:
space:
mode:
authorWillem Jan Palenstijn <WillemJan.Palenstijn@uantwerpen.be>2013-07-01 22:34:11 +0000
committerwpalenst <WillemJan.Palenstijn@uantwerpen.be>2013-07-01 22:34:11 +0000
commitb2fc6c70434674d74551c3a6c01ffb3233499312 (patch)
treeb17f080ebc504ab85ebb7c3d89f917fd87ce9e00 /include/astra/ArtAlgorithm.h
downloadastra-b2fc6c70434674d74551c3a6c01ffb3233499312.tar.gz
astra-b2fc6c70434674d74551c3a6c01ffb3233499312.tar.bz2
astra-b2fc6c70434674d74551c3a6c01ffb3233499312.tar.xz
astra-b2fc6c70434674d74551c3a6c01ffb3233499312.zip
Update version to 1.3
Diffstat (limited to 'include/astra/ArtAlgorithm.h')
-rw-r--r--include/astra/ArtAlgorithm.h196
1 files changed, 196 insertions, 0 deletions
diff --git a/include/astra/ArtAlgorithm.h b/include/astra/ArtAlgorithm.h
new file mode 100644
index 0000000..bd02fc4
--- /dev/null
+++ b/include/astra/ArtAlgorithm.h
@@ -0,0 +1,196 @@
+/*
+-----------------------------------------------------------------------
+Copyright 2012 iMinds-Vision Lab, University of Antwerp
+
+Contact: astra@ua.ac.be
+Website: http://astra.ua.ac.be
+
+
+This file is part of the
+All Scale Tomographic Reconstruction Antwerp Toolbox ("ASTRA Toolbox").
+
+The ASTRA Toolbox is free software: you can redistribute it and/or modify
+it under the terms of the GNU General Public License as published by
+the Free Software Foundation, either version 3 of the License, or
+(at your option) any later version.
+
+The ASTRA Toolbox is distributed in the hope that it will be useful,
+but WITHOUT ANY WARRANTY; without even the implied warranty of
+MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+GNU General Public License for more details.
+
+You should have received a copy of the GNU General Public License
+along with the ASTRA Toolbox. If not, see <http://www.gnu.org/licenses/>.
+
+-----------------------------------------------------------------------
+$Id$
+*/
+
+#ifndef _INC_ASTRA_ARTALGORITHM
+#define _INC_ASTRA_ARTALGORITHM
+
+#include "Globals.h"
+#include "Config.h"
+
+#include "Algorithm.h"
+#include "ReconstructionAlgorithm2D.h"
+
+#include "Projector2D.h"
+#include "Float32ProjectionData2D.h"
+#include "Float32VolumeData2D.h"
+
+namespace astra {
+
+/**
+ * This class contains the implementation of the ART (Algebraic Reconstruction Technique) algorithm.
+ *
+ * The update step of pixel \f$v_j\f$ for ray \f$i\f$ and iteration \f$k\f$ is given by:
+ * \f[
+ * v_j^{(k+1)} = v_j^{(k)} + \lambda \frac{p_i - \sum_{r=1}^{N} w_{ir}v_r^{(k)}}{\sum_{k=1}^{N} w_{ik}^2}
+ * \f]
+ *
+ * \par XML Configuration
+ * \astra_xml_item{ProjectorId, integer, Identifier of a projector as it is stored in the ProjectorManager.}
+ * \astra_xml_item{ProjectionDataId, integer, Identifier of a projection data object as it is stored in the DataManager.}
+ * \astra_xml_item{ReconstructionDataId, integer, Identifier of a volume data object as it is stored in the DataManager.}
+ * \astra_xml_item_option{ReconstructionMaskId, integer, not used, Identifier of a volume data object that acts as a reconstruction mask. 1 = reconstruct on this pixel. 0 = don't reconstruct on this pixel.}
+ * \astra_xml_item_option{SinogramMaskId, integer, not used, Identifier of a projection data object that acts as a projection mask. 1 = reconstruct using this ray. 0 = don't use this ray while reconstructing.}
+ * \astra_xml_item_option{UseMinConstraint, bool, false, Use minimum value constraint.}
+ * \astra_xml_item_option{MinConstraintValue, float, 0, Minimum constraint value.}
+ * \astra_xml_item_option{UseMaxConstraint, bool, false, Use maximum value constraint.}
+ * \astra_xml_item_option{MaxConstraintValue, float, 255, Maximum constraint value.}
+ * \astra_xml_item_option{Lamda, float, 1, The relaxation factor.}
+ * \astra_xml_item_option{RayOrder, string, "sequential", the order in which the rays are updated. 'sequential' or 'custom'}
+ * \astra_xml_item_option{RayOrderList, n by 2 vector of float, not used, if RayOrder='custom': use this ray order. Each row consist of a projection id and detector id.}
+ *
+ * \par MATLAB example
+ * \astra_code{
+ * cfg = astra_struct('ART');\n
+ * cfg.ProjectorId = proj_id;\n
+ * cfg.ProjectionDataId = sino_id;\n
+ * cfg.ReconstructionDataId = recon_id;\n
+ * cfg.option.MaskId = mask_id;\n
+ * cfg.option.UseMinConstraint = 'yes';\n
+ * cfg.option.UseMaxConstraint = 'yes';\n
+ * cfg.option.MaxConstraintValue = 1024;\n
+ * cfg.option.Lamda = 0.7;\n
+ * cfg.option.RayOrder = 'custom';\n
+ * cfg.option.RayOrderList = [0\,0; 0\,2; 1\,0];\n
+ * alg_id = astra_mex_algorithm('create'\, cfg);\n
+ * astra_mex_algorithm('iterate'\, alg_id\, 1000);\n
+ * astra_mex_algorithm('delete'\, alg_id);\n
+ * }
+ */
+class _AstraExport CArtAlgorithm : public CReconstructionAlgorithm2D {
+
+protected:
+
+ /** Initial clearing. Only to be used by constructors.
+ */
+ virtual void _clear();
+
+ /** Check the values of this object. If everything is ok, the object can be set to the initialized state.
+ * The following statements are then guaranteed to hold:
+ * - no NULL pointers
+ * - all sub-objects are initialized properly
+ * - the projector is compatible with both data objects
+ * - the ray order list only contains valid values
+ */
+ virtual bool _check();
+
+public:
+
+ // type of the algorithm, needed to register with CAlgorithmFactory
+ static std::string type;
+
+ /** Default constructor, containing no code.
+ */
+ CArtAlgorithm();
+
+ /** Destructor.
+ */
+ virtual ~CArtAlgorithm();
+
+ /** Initialize the algorithm with a config object.
+ *
+ * @param _cfg Configuration Object
+ * @return initialization successful?
+ */
+ virtual bool initialize(const Config& _cfg);
+
+ /** Initialize class, use sequential ray order.
+ *
+ * @param _pProjector Projector Object.
+ * @param _pSinogram ProjectionData2D object containing the sinogram data.
+ * @param _pReconstruction VolumeData2D object for storing the reconstructed volume.
+ */
+ bool initialize(CProjector2D* _pProjector,
+ CFloat32ProjectionData2D* _pSinogram,
+ CFloat32VolumeData2D* _pReconstruction);
+
+ /** Clear this class.
+ */
+ virtual void clear();
+
+ /** Set the relaxation factor.
+ *
+ * @param _fLambda Relaxation factor
+ */
+ void setLambda(float32 _fLambda);
+
+ /** Set the order in which the rays will be selected
+ *
+ * @param _piProjectionOrder Order of the rays, the projections. (size should be _piRayCount)
+ * @param _piDetectorOrder Order of the rays, the detectors. (size should be _piRayCount)
+ * @param _piRayCount Number of rays in the two previous arrays.
+ */
+ void setRayOrder(int* _piProjectionOrder, int* _piDetectorOrder, int _piRayCount);
+
+ /** Get all information parameters
+ *
+ * @return map with all boost::any object
+ */
+ virtual map<string,boost::any> getInformation();
+
+ /** Get a single piece of information represented as a boost::any
+ *
+ * @param _sIdentifier identifier string to specify which piece of information you want
+ * @return boost::any object
+ */
+ virtual boost::any getInformation(std::string _sIdentifier);
+
+ /** Perform a number of iterations.
+ *
+ * @param _iNrIterations amount of iterations to perform.
+ */
+ virtual void run(int _iNrIterations = 0);
+
+ /** Get a description of the class.
+ *
+ * @return description string
+ */
+ virtual std::string description() const;
+
+protected:
+
+ //< Relaxation Factor
+ float32 m_fLambda;
+
+ //< Order of the rays, the projections.
+ int* m_piProjectionOrder;
+ //< Order of the rays, the detectors.
+ int* m_piDetectorOrder;
+ //< Number of rays specified in the ray order arrays.
+ int m_iRayCount;
+ //< Current index in the ray order arrays.
+ int m_iCurrentRay;
+
+};
+
+// inline functions
+inline std::string CArtAlgorithm::description() const { return CArtAlgorithm::type; };
+
+
+} // end namespace
+
+#endif