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-rw-r--r--src/CompositeGeometryManager.cpp271
-rw-r--r--src/CudaBackProjectionAlgorithm3D.cpp20
-rw-r--r--src/CudaFDKAlgorithm3D.cpp12
-rw-r--r--src/CudaForwardProjectionAlgorithm3D.cpp8
-rw-r--r--src/Float32Data3D.cpp6
-rw-r--r--src/Float32Data3DGPU.cpp98
-rw-r--r--src/Float32Data3DMemory.cpp41
-rw-r--r--src/Float32ProjectionData3D.cpp226
-rw-r--r--src/Float32ProjectionData3DGPU.cpp71
-rw-r--r--src/Float32ProjectionData3DMemory.cpp98
-rw-r--r--src/Float32VolumeData3D.cpp222
-rw-r--r--src/Float32VolumeData3DGPU.cpp71
-rw-r--r--src/Float32VolumeData3DMemory.cpp92
13 files changed, 493 insertions, 743 deletions
diff --git a/src/CompositeGeometryManager.cpp b/src/CompositeGeometryManager.cpp
index c3af228..a4dace2 100644
--- a/src/CompositeGeometryManager.cpp
+++ b/src/CompositeGeometryManager.cpp
@@ -39,6 +39,8 @@ along with the ASTRA Toolbox. If not, see <http://www.gnu.org/licenses/>.
#include "astra/CudaProjector3D.h"
#include "astra/Float32ProjectionData3DMemory.h"
#include "astra/Float32VolumeData3DMemory.h"
+#include "astra/Float32ProjectionData3DGPU.h"
+#include "astra/Float32VolumeData3DGPU.h"
#include "astra/Logging.h"
#include "../cuda/3d/mem3d.h"
@@ -97,6 +99,127 @@ CCompositeGeometryManager::CCompositeGeometryManager()
// (First approach: 0.5/0.5)
+
+
+
+class _AstraExport CFloat32CustomGPUMemory {
+public:
+ astraCUDA3d::MemHandle3D hnd; // Only required to be valid between allocate/free
+ virtual bool allocateGPUMemory(unsigned int x, unsigned int y, unsigned int z, astraCUDA3d::Mem3DZeroMode zero)=0;
+ virtual bool copyToGPUMemory(const astraCUDA3d::SSubDimensions3D &pos)=0;
+ virtual bool copyFromGPUMemory(const astraCUDA3d::SSubDimensions3D &pos)=0;
+ virtual bool freeGPUMemory()=0;
+ virtual ~CFloat32CustomGPUMemory() { }
+};
+
+class CFloat32ExistingGPUMemory : public astra::CFloat32CustomGPUMemory {
+public:
+ CFloat32ExistingGPUMemory(CFloat32Data3DGPU *d);
+ virtual bool allocateGPUMemory(unsigned int x, unsigned int y, unsigned int z, astraCUDA3d::Mem3DZeroMode zero);
+ virtual bool copyToGPUMemory(const astraCUDA3d::SSubDimensions3D &pos);
+ virtual bool copyFromGPUMemory(const astraCUDA3d::SSubDimensions3D &pos);
+ virtual bool freeGPUMemory();
+
+protected:
+ unsigned int x, y, z;
+};
+
+class CFloat32DefaultGPUMemory : public astra::CFloat32CustomGPUMemory {
+public:
+ CFloat32DefaultGPUMemory(CFloat32Data3DMemory* d) {
+ ptr = d->getData();
+ }
+ virtual bool allocateGPUMemory(unsigned int x, unsigned int y, unsigned int z, astraCUDA3d::Mem3DZeroMode zero) {
+ hnd = astraCUDA3d::allocateGPUMemory(x, y, z, zero);
+ return (bool)hnd;
+ }
+ virtual bool copyToGPUMemory(const astraCUDA3d::SSubDimensions3D &pos) {
+ return astraCUDA3d::copyToGPUMemory(ptr, hnd, pos);
+ }
+ virtual bool copyFromGPUMemory(const astraCUDA3d::SSubDimensions3D &pos) {
+ return astraCUDA3d::copyFromGPUMemory(ptr, hnd, pos);
+ }
+ virtual bool freeGPUMemory() {
+ return astraCUDA3d::freeGPUMemory(hnd);
+ }
+
+protected:
+ float *ptr;
+};
+
+
+
+CFloat32ExistingGPUMemory::CFloat32ExistingGPUMemory(CFloat32Data3DGPU *d)
+{
+ hnd = d->getHandle();
+ x = d->getWidth();
+ y = d->getHeight();
+ z = d->getDepth();
+}
+
+bool CFloat32ExistingGPUMemory::allocateGPUMemory(unsigned int x_, unsigned int y_, unsigned int z_, astraCUDA3d::Mem3DZeroMode zero) {
+ assert(x_ == x);
+ assert(y_ == y);
+ assert(z_ == z);
+
+ if (zero == astraCUDA3d::INIT_ZERO)
+ return astraCUDA3d::zeroGPUMemory(hnd, x, y, z);
+ else
+ return true;
+}
+bool CFloat32ExistingGPUMemory::copyToGPUMemory(const astraCUDA3d::SSubDimensions3D &pos) {
+ assert(pos.nx == x);
+ assert(pos.ny == y);
+ assert(pos.nz == z);
+ assert(pos.pitch == x);
+ assert(pos.subx == 0);
+ assert(pos.suby == 0);
+ assert(pos.subnx == x);
+ assert(pos.subny == y);
+
+ // These are less necessary than x/y, but allowing access to
+ // subvolumes needs an interface change
+ assert(pos.subz == 0);
+ assert(pos.subnz == z);
+
+ return true;
+}
+bool CFloat32ExistingGPUMemory::copyFromGPUMemory(const astraCUDA3d::SSubDimensions3D &pos) {
+ assert(pos.nx == x);
+ assert(pos.ny == y);
+ assert(pos.nz == z);
+ assert(pos.pitch == x);
+ assert(pos.subx == 0);
+ assert(pos.suby == 0);
+ assert(pos.subnx == x);
+ assert(pos.subny == y);
+
+ // These are less necessary than x/y, but allowing access to
+ // subvolumes needs an interface change
+ assert(pos.subz == 0);
+ assert(pos.subnz == z);
+
+ return true;
+}
+bool CFloat32ExistingGPUMemory::freeGPUMemory() {
+ return true;
+}
+
+
+CFloat32CustomGPUMemory * createGPUMemoryHandler(CFloat32Data3D *d) {
+ CFloat32Data3DMemory *dMem = dynamic_cast<CFloat32Data3DMemory*>(d);
+ CFloat32Data3DGPU *dGPU = dynamic_cast<CFloat32Data3DGPU*>(d);
+
+ if (dMem)
+ return new CFloat32DefaultGPUMemory(dMem);
+ else
+ return new CFloat32ExistingGPUMemory(dGPU);
+}
+
+
+
+
+
bool CCompositeGeometryManager::splitJobs(TJobSet &jobs, size_t maxSize, int div, TJobSet &split)
{
int maxBlockDim = astraCUDA3d::maxBlockDimension();
@@ -205,6 +328,7 @@ static std::pair<double, double> reduceProjectionVertical(const CVolumeGeometry3
// reduce self to only cover intersection with projection of VolumePart
// (Project corners of volume, take bounding box)
+ assert(pProjGeom->getProjectionCount() > 0);
for (int i = 0; i < pProjGeom->getProjectionCount(); ++i) {
double vol_u[8];
@@ -280,7 +404,7 @@ CCompositeGeometryManager::CVolumePart::~CVolumePart()
delete pGeom;
}
-void CCompositeGeometryManager::CVolumePart::getDims(size_t &x, size_t &y, size_t &z)
+void CCompositeGeometryManager::CVolumePart::getDims(size_t &x, size_t &y, size_t &z) const
{
if (!pGeom) {
x = y = z = 0;
@@ -292,13 +416,28 @@ void CCompositeGeometryManager::CVolumePart::getDims(size_t &x, size_t &y, size_
z = pGeom->getGridSliceCount();
}
-size_t CCompositeGeometryManager::CPart::getSize()
+size_t CCompositeGeometryManager::CPart::getSize() const
{
size_t x, y, z;
getDims(x, y, z);
return x * y * z;
}
+bool CCompositeGeometryManager::CPart::isFull() const
+{
+ size_t x, y, z;
+ getDims(x, y, z);
+ return x == (size_t)pData->getWidth() &&
+ y == (size_t)pData->getHeight() &&
+ z == (size_t)pData->getDepth();
+}
+
+bool CCompositeGeometryManager::CPart::canSplitAndReduce() const
+{
+ return dynamic_cast<CFloat32Data3DMemory *>(pData) != 0;
+}
+
+
static bool testVolumeRange(const std::pair<double, double>& fullRange,
const CVolumeGeometry3D *pVolGeom,
@@ -334,6 +473,9 @@ static bool testVolumeRange(const std::pair<double, double>& fullRange,
CCompositeGeometryManager::CPart* CCompositeGeometryManager::CVolumePart::reduce(const CPart *_other)
{
+ if (!canSplitAndReduce())
+ return clone();
+
const CProjectionPart *other = dynamic_cast<const CProjectionPart *>(_other);
assert(other);
@@ -654,7 +796,7 @@ static CProjectionGeometry3D* getSubProjectionGeometryV(const CProjectionGeometr
// - maybe all approximately the same size?
void CCompositeGeometryManager::CVolumePart::splitX(CCompositeGeometryManager::TPartList& out, size_t maxSize, size_t maxDim, int div)
{
- if (true) {
+ if (canSplitAndReduce()) {
// Split in vertical direction only at first, until we figure out
// a model for splitting in other directions
@@ -664,7 +806,7 @@ void CCompositeGeometryManager::CVolumePart::splitX(CCompositeGeometryManager::T
size_t blockSize = computeLinearSplit(m, div, sliceCount);
int rem = blockSize - (sliceCount % blockSize);
- if (rem == blockSize)
+ if ((size_t)rem == blockSize)
rem = 0;
ASTRA_DEBUG("From %d to %d step %d", -(rem / 2), sliceCount, blockSize);
@@ -698,12 +840,14 @@ void CCompositeGeometryManager::CVolumePart::splitX(CCompositeGeometryManager::T
out.push_back(boost::shared_ptr<CPart>(sub));
}
+ } else {
+ out.push_back(boost::shared_ptr<CPart>(clone()));
}
}
void CCompositeGeometryManager::CVolumePart::splitY(CCompositeGeometryManager::TPartList& out, size_t maxSize, size_t maxDim, int div)
{
- if (true) {
+ if (canSplitAndReduce()) {
// Split in vertical direction only at first, until we figure out
// a model for splitting in other directions
@@ -713,7 +857,7 @@ void CCompositeGeometryManager::CVolumePart::splitY(CCompositeGeometryManager::T
size_t blockSize = computeLinearSplit(m, div, sliceCount);
int rem = blockSize - (sliceCount % blockSize);
- if (rem == blockSize)
+ if ((size_t)rem == blockSize)
rem = 0;
ASTRA_DEBUG("From %d to %d step %d", -(rem / 2), sliceCount, blockSize);
@@ -747,12 +891,14 @@ void CCompositeGeometryManager::CVolumePart::splitY(CCompositeGeometryManager::T
out.push_back(boost::shared_ptr<CPart>(sub));
}
+ } else {
+ out.push_back(boost::shared_ptr<CPart>(clone()));
}
}
void CCompositeGeometryManager::CVolumePart::splitZ(CCompositeGeometryManager::TPartList& out, size_t maxSize, size_t maxDim, int div)
{
- if (true) {
+ if (canSplitAndReduce()) {
// Split in vertical direction only at first, until we figure out
// a model for splitting in other directions
@@ -762,7 +908,7 @@ void CCompositeGeometryManager::CVolumePart::splitZ(CCompositeGeometryManager::T
size_t blockSize = computeLinearSplit(m, div, sliceCount);
int rem = blockSize - (sliceCount % blockSize);
- if (rem == blockSize)
+ if ((size_t)rem == blockSize)
rem = 0;
ASTRA_DEBUG("From %d to %d step %d", -(rem / 2), sliceCount, blockSize);
@@ -796,6 +942,8 @@ void CCompositeGeometryManager::CVolumePart::splitZ(CCompositeGeometryManager::T
out.push_back(boost::shared_ptr<CPart>(sub));
}
+ } else {
+ out.push_back(boost::shared_ptr<CPart>(clone()));
}
}
@@ -815,7 +963,7 @@ CCompositeGeometryManager::CProjectionPart::~CProjectionPart()
delete pGeom;
}
-void CCompositeGeometryManager::CProjectionPart::getDims(size_t &x, size_t &y, size_t &z)
+void CCompositeGeometryManager::CProjectionPart::getDims(size_t &x, size_t &y, size_t &z) const
{
if (!pGeom) {
x = y = z = 0;
@@ -831,6 +979,9 @@ void CCompositeGeometryManager::CProjectionPart::getDims(size_t &x, size_t &y, s
CCompositeGeometryManager::CPart* CCompositeGeometryManager::CProjectionPart::reduce(const CPart *_other)
{
+ if (!canSplitAndReduce())
+ return clone();
+
const CVolumePart *other = dynamic_cast<const CVolumePart *>(_other);
assert(other);
@@ -868,7 +1019,7 @@ CCompositeGeometryManager::CPart* CCompositeGeometryManager::CProjectionPart::re
void CCompositeGeometryManager::CProjectionPart::splitX(CCompositeGeometryManager::TPartList &out, size_t maxSize, size_t maxDim, int div)
{
- if (true) {
+ if (canSplitAndReduce()) {
// Split in vertical direction only at first, until we figure out
// a model for splitting in other directions
@@ -878,7 +1029,7 @@ void CCompositeGeometryManager::CProjectionPart::splitX(CCompositeGeometryManage
size_t blockSize = computeLinearSplit(m, div, sliceCount);
int rem = blockSize - (sliceCount % blockSize);
- if (rem == blockSize)
+ if ((size_t)rem == blockSize)
rem = 0;
ASTRA_DEBUG("From %d to %d step %d", -(rem / 2), sliceCount, blockSize);
@@ -903,6 +1054,8 @@ void CCompositeGeometryManager::CProjectionPart::splitX(CCompositeGeometryManage
out.push_back(boost::shared_ptr<CPart>(sub));
}
+ } else {
+ out.push_back(boost::shared_ptr<CPart>(clone()));
}
}
@@ -914,7 +1067,7 @@ void CCompositeGeometryManager::CProjectionPart::splitY(CCompositeGeometryManage
void CCompositeGeometryManager::CProjectionPart::splitZ(CCompositeGeometryManager::TPartList &out, size_t maxSize, size_t maxDim, int div)
{
- if (true) {
+ if (canSplitAndReduce()) {
// Split in vertical direction only at first, until we figure out
// a model for splitting in other directions
@@ -924,7 +1077,7 @@ void CCompositeGeometryManager::CProjectionPart::splitZ(CCompositeGeometryManage
size_t blockSize = computeLinearSplit(m, div, sliceCount);
int rem = blockSize - (sliceCount % blockSize);
- if (rem == blockSize)
+ if ((size_t)rem == blockSize)
rem = 0;
ASTRA_DEBUG("From %d to %d step %d", -(rem / 2), sliceCount, blockSize);
@@ -949,6 +1102,8 @@ void CCompositeGeometryManager::CProjectionPart::splitZ(CCompositeGeometryManage
out.push_back(boost::shared_ptr<CPart>(sub));
}
+ } else {
+ out.push_back(boost::shared_ptr<CPart>(clone()));
}
}
@@ -959,8 +1114,8 @@ CCompositeGeometryManager::CProjectionPart* CCompositeGeometryManager::CProjecti
}
CCompositeGeometryManager::SJob CCompositeGeometryManager::createJobFP(CProjector3D *pProjector,
- CFloat32VolumeData3DMemory *pVolData,
- CFloat32ProjectionData3DMemory *pProjData)
+ CFloat32VolumeData3D *pVolData,
+ CFloat32ProjectionData3D *pProjData)
{
ASTRA_DEBUG("CCompositeGeometryManager::createJobFP");
// Create single job for FP
@@ -992,8 +1147,8 @@ CCompositeGeometryManager::SJob CCompositeGeometryManager::createJobFP(CProjecto
}
CCompositeGeometryManager::SJob CCompositeGeometryManager::createJobBP(CProjector3D *pProjector,
- CFloat32VolumeData3DMemory *pVolData,
- CFloat32ProjectionData3DMemory *pProjData)
+ CFloat32VolumeData3D *pVolData,
+ CFloat32ProjectionData3D *pProjData)
{
ASTRA_DEBUG("CCompositeGeometryManager::createJobBP");
// Create single job for BP
@@ -1022,8 +1177,8 @@ CCompositeGeometryManager::SJob CCompositeGeometryManager::createJobBP(CProjecto
return BP;
}
-bool CCompositeGeometryManager::doFP(CProjector3D *pProjector, CFloat32VolumeData3DMemory *pVolData,
- CFloat32ProjectionData3DMemory *pProjData)
+bool CCompositeGeometryManager::doFP(CProjector3D *pProjector, CFloat32VolumeData3D *pVolData,
+ CFloat32ProjectionData3D *pProjData)
{
TJobList L;
L.push_back(createJobFP(pProjector, pVolData, pProjData));
@@ -1031,8 +1186,8 @@ bool CCompositeGeometryManager::doFP(CProjector3D *pProjector, CFloat32VolumeDat
return doJobs(L);
}
-bool CCompositeGeometryManager::doBP(CProjector3D *pProjector, CFloat32VolumeData3DMemory *pVolData,
- CFloat32ProjectionData3DMemory *pProjData)
+bool CCompositeGeometryManager::doBP(CProjector3D *pProjector, CFloat32VolumeData3D *pVolData,
+ CFloat32ProjectionData3D *pProjData)
{
TJobList L;
L.push_back(createJobBP(pProjector, pVolData, pProjData));
@@ -1041,8 +1196,8 @@ bool CCompositeGeometryManager::doBP(CProjector3D *pProjector, CFloat32VolumeDat
}
-bool CCompositeGeometryManager::doFDK(CProjector3D *pProjector, CFloat32VolumeData3DMemory *pVolData,
- CFloat32ProjectionData3DMemory *pProjData, bool bShortScan,
+bool CCompositeGeometryManager::doFDK(CProjector3D *pProjector, CFloat32VolumeData3D *pVolData,
+ CFloat32ProjectionData3D *pProjData, bool bShortScan,
const float *pfFilter)
{
if (!dynamic_cast<CConeProjectionGeometry3D*>(pProjData->getGeometry())) {
@@ -1061,11 +1216,11 @@ bool CCompositeGeometryManager::doFDK(CProjector3D *pProjector, CFloat32VolumeDa
return doJobs(L);
}
-bool CCompositeGeometryManager::doFP(CProjector3D *pProjector, const std::vector<CFloat32VolumeData3DMemory *>& volData, const std::vector<CFloat32ProjectionData3DMemory *>& projData)
+bool CCompositeGeometryManager::doFP(CProjector3D *pProjector, const std::vector<CFloat32VolumeData3D *>& volData, const std::vector<CFloat32ProjectionData3D *>& projData)
{
ASTRA_DEBUG("CCompositeGeometryManager::doFP, multi-volume");
- std::vector<CFloat32VolumeData3DMemory *>::const_iterator i;
+ std::vector<CFloat32VolumeData3D *>::const_iterator i;
std::vector<boost::shared_ptr<CPart> > inputs;
for (i = volData.begin(); i != volData.end(); ++i) {
@@ -1079,7 +1234,7 @@ bool CCompositeGeometryManager::doFP(CProjector3D *pProjector, const std::vector
inputs.push_back(boost::shared_ptr<CPart>(input));
}
- std::vector<CFloat32ProjectionData3DMemory *>::const_iterator j;
+ std::vector<CFloat32ProjectionData3D *>::const_iterator j;
std::vector<boost::shared_ptr<CPart> > outputs;
for (j = projData.begin(); j != projData.end(); ++j) {
@@ -1115,12 +1270,12 @@ bool CCompositeGeometryManager::doFP(CProjector3D *pProjector, const std::vector
return doJobs(L);
}
-bool CCompositeGeometryManager::doBP(CProjector3D *pProjector, const std::vector<CFloat32VolumeData3DMemory *>& volData, const std::vector<CFloat32ProjectionData3DMemory *>& projData)
+bool CCompositeGeometryManager::doBP(CProjector3D *pProjector, const std::vector<CFloat32VolumeData3D *>& volData, const std::vector<CFloat32ProjectionData3D *>& projData)
{
ASTRA_DEBUG("CCompositeGeometryManager::doBP, multi-volume");
- std::vector<CFloat32VolumeData3DMemory *>::const_iterator i;
+ std::vector<CFloat32VolumeData3D *>::const_iterator i;
std::vector<boost::shared_ptr<CPart> > outputs;
for (i = volData.begin(); i != volData.end(); ++i) {
@@ -1134,7 +1289,7 @@ bool CCompositeGeometryManager::doBP(CProjector3D *pProjector, const std::vector
outputs.push_back(boost::shared_ptr<CPart>(output));
}
- std::vector<CFloat32ProjectionData3DMemory *>::const_iterator j;
+ std::vector<CFloat32ProjectionData3D *>::const_iterator j;
std::vector<boost::shared_ptr<CPart> > inputs;
for (j = projData.begin(); j != projData.end(); ++j) {
@@ -1188,14 +1343,25 @@ static bool doJob(const CCompositeGeometryManager::TJobSet::const_iterator& iter
if (L.begin()->eType == CCompositeGeometryManager::SJob::JOB_NOP) {
// just zero output?
if (zero) {
- for (size_t z = 0; z < outz; ++z) {
- for (size_t y = 0; y < outy; ++y) {
- float* ptr = output->pData->getData();
- ptr += (z + output->subX) * (size_t)output->pData->getHeight() * (size_t)output->pData->getWidth();
- ptr += (y + output->subY) * (size_t)output->pData->getWidth();
- ptr += output->subX;
- memset(ptr, 0, sizeof(float) * outx);
+ // TODO: This function shouldn't have to know about this difference
+ // between Memory/GPU
+ CFloat32Data3DMemory *hostMem = dynamic_cast<CFloat32Data3DMemory *>(output->pData);
+ if (hostMem) {
+ for (size_t z = 0; z < outz; ++z) {
+ for (size_t y = 0; y < outy; ++y) {
+ float* ptr = hostMem->getData();
+ ptr += (z + output->subX) * (size_t)output->pData->getHeight() * (size_t)output->pData->getWidth();
+ ptr += (y + output->subY) * (size_t)output->pData->getWidth();
+ ptr += output->subX;
+ memset(ptr, 0, sizeof(float) * outx);
+ }
}
+ } else {
+ CFloat32Data3DGPU *gpuMem = dynamic_cast<CFloat32Data3DGPU *>(output->pData);
+ assert(gpuMem);
+ assert(output->isFull()); // TODO: zero subset?
+
+ zeroGPUMemory(gpuMem->getHandle(), outx, outy, outz);
}
}
return true;
@@ -1214,10 +1380,11 @@ static bool doJob(const CCompositeGeometryManager::TJobSet::const_iterator& iter
dstdims.subx = output->subX;
dstdims.suby = output->subY;
dstdims.subz = output->subZ;
- float *dst = output->pData->getData();
- astraCUDA3d::MemHandle3D outputMem = astraCUDA3d::allocateGPUMemory(outx, outy, outz, zero ? astraCUDA3d::INIT_ZERO : astraCUDA3d::INIT_NO);
- bool ok = outputMem;
+ CFloat32CustomGPUMemory *dstMem = createGPUMemoryHandler(output->pData);
+
+ bool ok = dstMem->allocateGPUMemory(outx, outy, outz, zero ? astraCUDA3d::INIT_ZERO : astraCUDA3d::INIT_NO);
+ if (!ok) ASTRA_ERROR("Error allocating GPU memory");
for (CCompositeGeometryManager::TJobList::const_iterator i = L.begin(); i != L.end(); ++i) {
const CCompositeGeometryManager::SJob &j = *i;
@@ -1238,7 +1405,8 @@ static bool doJob(const CCompositeGeometryManager::TJobSet::const_iterator& iter
size_t inx, iny, inz;
j.pInput->getDims(inx, iny, inz);
- astraCUDA3d::MemHandle3D inputMem = astraCUDA3d::allocateGPUMemory(inx, iny, inz, astraCUDA3d::INIT_NO);
+
+ CFloat32CustomGPUMemory *srcMem = createGPUMemoryHandler(j.pInput->pData);
astraCUDA3d::SSubDimensions3D srcdims;
srcdims.nx = j.pInput->pData->getWidth();
@@ -1251,9 +1419,11 @@ static bool doJob(const CCompositeGeometryManager::TJobSet::const_iterator& iter
srcdims.subx = j.pInput->subX;
srcdims.suby = j.pInput->subY;
srcdims.subz = j.pInput->subZ;
- const float *src = j.pInput->pData->getDataConst();
- ok = astraCUDA3d::copyToGPUMemory(src, inputMem, srcdims);
+ ok = srcMem->allocateGPUMemory(inx, iny, inz, astraCUDA3d::INIT_NO);
+ if (!ok) ASTRA_ERROR("Error allocating GPU memory");
+
+ ok = srcMem->copyToGPUMemory(srcdims);
if (!ok) ASTRA_ERROR("Error copying input data to GPU");
switch (j.eType) {
@@ -1264,7 +1434,7 @@ static bool doJob(const CCompositeGeometryManager::TJobSet::const_iterator& iter
ASTRA_DEBUG("CCompositeGeometryManager::doJobs: doing FP");
- ok = astraCUDA3d::FP(((CCompositeGeometryManager::CProjectionPart*)j.pOutput.get())->pGeom, outputMem, ((CCompositeGeometryManager::CVolumePart*)j.pInput.get())->pGeom, inputMem, detectorSuperSampling, projKernel);
+ ok = astraCUDA3d::FP(((CCompositeGeometryManager::CProjectionPart*)j.pOutput.get())->pGeom, dstMem->hnd, ((CCompositeGeometryManager::CVolumePart*)j.pInput.get())->pGeom, srcMem->hnd, detectorSuperSampling, projKernel);
if (!ok) ASTRA_ERROR("Error performing sub-FP");
ASTRA_DEBUG("CCompositeGeometryManager::doJobs: FP done");
}
@@ -1276,7 +1446,7 @@ static bool doJob(const CCompositeGeometryManager::TJobSet::const_iterator& iter
ASTRA_DEBUG("CCompositeGeometryManager::doJobs: doing BP");
- ok = astraCUDA3d::BP(((CCompositeGeometryManager::CProjectionPart*)j.pInput.get())->pGeom, inputMem, ((CCompositeGeometryManager::CVolumePart*)j.pOutput.get())->pGeom, outputMem, voxelSuperSampling, densityWeighting);
+ ok = astraCUDA3d::BP(((CCompositeGeometryManager::CProjectionPart*)j.pInput.get())->pGeom, srcMem->hnd, ((CCompositeGeometryManager::CVolumePart*)j.pOutput.get())->pGeom, dstMem->hnd, voxelSuperSampling, densityWeighting);
if (!ok) ASTRA_ERROR("Error performing sub-BP");
ASTRA_DEBUG("CCompositeGeometryManager::doJobs: BP done");
}
@@ -1292,7 +1462,7 @@ static bool doJob(const CCompositeGeometryManager::TJobSet::const_iterator& iter
} else {
ASTRA_DEBUG("CCompositeGeometryManager::doJobs: doing FDK");
- ok = astraCUDA3d::FDK(((CCompositeGeometryManager::CProjectionPart*)j.pInput.get())->pGeom, inputMem, ((CCompositeGeometryManager::CVolumePart*)j.pOutput.get())->pGeom, outputMem, j.FDKSettings.bShortScan, j.FDKSettings.pfFilter);
+ ok = astraCUDA3d::FDK(((CCompositeGeometryManager::CProjectionPart*)j.pInput.get())->pGeom, srcMem->hnd, ((CCompositeGeometryManager::CVolumePart*)j.pOutput.get())->pGeom, dstMem->hnd, j.FDKSettings.bShortScan, j.FDKSettings.pfFilter);
if (!ok) ASTRA_ERROR("Error performing sub-FDK");
ASTRA_DEBUG("CCompositeGeometryManager::doJobs: FDK done");
}
@@ -1302,17 +1472,20 @@ static bool doJob(const CCompositeGeometryManager::TJobSet::const_iterator& iter
assert(false);
}
- ok = astraCUDA3d::freeGPUMemory(inputMem);
+ ok = srcMem->freeGPUMemory();
if (!ok) ASTRA_ERROR("Error freeing GPU memory");
+ delete srcMem;
}
- ok = astraCUDA3d::copyFromGPUMemory(dst, outputMem, dstdims);
+ ok = dstMem->copyFromGPUMemory(dstdims);
if (!ok) ASTRA_ERROR("Error copying output data from GPU");
- ok = astraCUDA3d::freeGPUMemory(outputMem);
+ ok = dstMem->freeGPUMemory();
if (!ok) ASTRA_ERROR("Error freeing GPU memory");
+ delete dstMem;
+
return true;
}
@@ -1455,6 +1628,8 @@ void CCompositeGeometryManager::setGPUIndices(const std::vector<int>& GPUIndices
bool CCompositeGeometryManager::doJobs(TJobList &jobs)
{
+ // TODO: Proper clean up if substeps fail (Or as proper as possible)
+
ASTRA_DEBUG("CCompositeGeometryManager::doJobs");
// Sort job list into job set by output part
diff --git a/src/CudaBackProjectionAlgorithm3D.cpp b/src/CudaBackProjectionAlgorithm3D.cpp
index 223a9a4..27bb968 100644
--- a/src/CudaBackProjectionAlgorithm3D.cpp
+++ b/src/CudaBackProjectionAlgorithm3D.cpp
@@ -60,8 +60,8 @@ CCudaBackProjectionAlgorithm3D::CCudaBackProjectionAlgorithm3D()
//----------------------------------------------------------------------------------------
// Constructor with initialization
CCudaBackProjectionAlgorithm3D::CCudaBackProjectionAlgorithm3D(CProjector3D* _pProjector,
- CFloat32ProjectionData3DMemory* _pProjectionData,
- CFloat32VolumeData3DMemory* _pReconstruction)
+ CFloat32ProjectionData3D* _pProjectionData,
+ CFloat32VolumeData3D* _pReconstruction)
{
_clear();
initialize(_pProjector, _pProjectionData, _pReconstruction);
@@ -145,8 +145,8 @@ bool CCudaBackProjectionAlgorithm3D::initialize(const Config& _cfg)
//----------------------------------------------------------------------------------------
// Initialize - C++
bool CCudaBackProjectionAlgorithm3D::initialize(CProjector3D* _pProjector,
- CFloat32ProjectionData3DMemory* _pSinogram,
- CFloat32VolumeData3DMemory* _pReconstruction)
+ CFloat32ProjectionData3D* _pSinogram,
+ CFloat32VolumeData3D* _pReconstruction)
{
// if already initialized, clear first
if (m_bIsInitialized) {
@@ -187,17 +187,21 @@ void CCudaBackProjectionAlgorithm3D::run(int _iNrIterations)
// check initialized
ASTRA_ASSERT(m_bIsInitialized);
- CFloat32ProjectionData3DMemory* pSinoMem = dynamic_cast<CFloat32ProjectionData3DMemory*>(m_pSinogram);
+ CFloat32ProjectionData3D* pSinoMem = dynamic_cast<CFloat32ProjectionData3D*>(m_pSinogram);
ASTRA_ASSERT(pSinoMem);
- CFloat32VolumeData3DMemory* pReconMem = dynamic_cast<CFloat32VolumeData3DMemory*>(m_pReconstruction);
+ CFloat32VolumeData3D* pReconMem = dynamic_cast<CFloat32VolumeData3D*>(m_pReconstruction);
ASTRA_ASSERT(pReconMem);
const CProjectionGeometry3D* projgeom = pSinoMem->getGeometry();
const CVolumeGeometry3D& volgeom = *pReconMem->getGeometry();
if (m_bSIRTWeighting) {
- astraCudaBP_SIRTWeighted(pReconMem->getData(),
- pSinoMem->getDataConst(),
+ CFloat32ProjectionData3DMemory* pSinoMemory = dynamic_cast<CFloat32ProjectionData3DMemory*>(m_pSinogram);
+ ASTRA_ASSERT(pSinoMemory);
+ CFloat32VolumeData3DMemory* pReconMemory = dynamic_cast<CFloat32VolumeData3DMemory*>(m_pReconstruction);
+ ASTRA_ASSERT(pReconMemory);
+ astraCudaBP_SIRTWeighted(pReconMemory->getData(),
+ pSinoMemory->getDataConst(),
&volgeom, projgeom,
m_iGPUIndex, m_iVoxelSuperSampling);
} else {
diff --git a/src/CudaFDKAlgorithm3D.cpp b/src/CudaFDKAlgorithm3D.cpp
index d02db6d..d503351 100644
--- a/src/CudaFDKAlgorithm3D.cpp
+++ b/src/CudaFDKAlgorithm3D.cpp
@@ -59,8 +59,8 @@ CCudaFDKAlgorithm3D::CCudaFDKAlgorithm3D()
//----------------------------------------------------------------------------------------
// Constructor with initialization
CCudaFDKAlgorithm3D::CCudaFDKAlgorithm3D(CProjector3D* _pProjector,
- CFloat32ProjectionData3DMemory* _pProjectionData,
- CFloat32VolumeData3DMemory* _pReconstruction)
+ CFloat32ProjectionData3D* _pProjectionData,
+ CFloat32VolumeData3D* _pReconstruction)
{
_clear();
initialize(_pProjector, _pProjectionData, _pReconstruction);
@@ -179,8 +179,8 @@ bool CCudaFDKAlgorithm3D::initialize(const Config& _cfg)
//----------------------------------------------------------------------------------------
// Initialize - C++
bool CCudaFDKAlgorithm3D::initialize(CProjector3D* _pProjector,
- CFloat32ProjectionData3DMemory* _pSinogram,
- CFloat32VolumeData3DMemory* _pReconstruction)
+ CFloat32ProjectionData3D* _pSinogram,
+ CFloat32VolumeData3D* _pReconstruction)
{
// if already initialized, clear first
if (m_bIsInitialized) {
@@ -225,9 +225,9 @@ void CCudaFDKAlgorithm3D::run(int _iNrIterations)
ASTRA_ASSERT(conegeom);
- CFloat32ProjectionData3DMemory* pSinoMem = dynamic_cast<CFloat32ProjectionData3DMemory*>(m_pSinogram);
+ CFloat32ProjectionData3D* pSinoMem = dynamic_cast<CFloat32ProjectionData3D*>(m_pSinogram);
ASTRA_ASSERT(pSinoMem);
- CFloat32VolumeData3DMemory* pReconMem = dynamic_cast<CFloat32VolumeData3DMemory*>(m_pReconstruction);
+ CFloat32VolumeData3D* pReconMem = dynamic_cast<CFloat32VolumeData3D*>(m_pReconstruction);
ASTRA_ASSERT(pReconMem);
const float *filter = NULL;
diff --git a/src/CudaForwardProjectionAlgorithm3D.cpp b/src/CudaForwardProjectionAlgorithm3D.cpp
index 6783093..ce808eb 100644
--- a/src/CudaForwardProjectionAlgorithm3D.cpp
+++ b/src/CudaForwardProjectionAlgorithm3D.cpp
@@ -101,14 +101,14 @@ bool CCudaForwardProjectionAlgorithm3D::initialize(const Config& _cfg)
node = _cfg.self.getSingleNode("ProjectionDataId");
ASTRA_CONFIG_CHECK(node, "CudaForwardProjection3D", "No ProjectionDataId tag specified.");
id = node.getContentInt();
- m_pProjections = dynamic_cast<CFloat32ProjectionData3DMemory*>(CData3DManager::getSingleton().get(id));
+ m_pProjections = dynamic_cast<CFloat32ProjectionData3D*>(CData3DManager::getSingleton().get(id));
CC.markNodeParsed("ProjectionDataId");
// reconstruction data
node = _cfg.self.getSingleNode("VolumeDataId");
ASTRA_CONFIG_CHECK(node, "CudaForwardProjection3D", "No VolumeDataId tag specified.");
id = node.getContentInt();
- m_pVolume = dynamic_cast<CFloat32VolumeData3DMemory*>(CData3DManager::getSingleton().get(id));
+ m_pVolume = dynamic_cast<CFloat32VolumeData3D*>(CData3DManager::getSingleton().get(id));
CC.markNodeParsed("VolumeDataId");
// optional: projector
@@ -140,8 +140,8 @@ bool CCudaForwardProjectionAlgorithm3D::initialize(const Config& _cfg)
bool CCudaForwardProjectionAlgorithm3D::initialize(CProjector3D* _pProjector,
- CFloat32ProjectionData3DMemory* _pProjections,
- CFloat32VolumeData3DMemory* _pVolume,
+ CFloat32ProjectionData3D* _pProjections,
+ CFloat32VolumeData3D* _pVolume,
int _iGPUindex, int _iDetectorSuperSampling)
{
m_pProjector = _pProjector;
diff --git a/src/Float32Data3D.cpp b/src/Float32Data3D.cpp
index cad1f18..cc824bd 100644
--- a/src/Float32Data3D.cpp
+++ b/src/Float32Data3D.cpp
@@ -28,6 +28,10 @@ along with the ASTRA Toolbox. If not, see <http://www.gnu.org/licenses/>.
#include "astra/Float32Data3D.h"
#include <sstream>
+#ifdef ASTRA_CUDA
+#include "../../cuda/3d/mem3d.h"
+#endif
+
using namespace std;
namespace astra {
@@ -60,7 +64,5 @@ std::string CFloat32Data3D::description() const
if (getType() == CFloat32Data3D::VOLUME) res << " volume data \t";
return res.str();
}
-//----------------------------------------------------------------------------------------
-
} // end namespace astra
diff --git a/src/Float32Data3DGPU.cpp b/src/Float32Data3DGPU.cpp
new file mode 100644
index 0000000..cd9c4ad
--- /dev/null
+++ b/src/Float32Data3DGPU.cpp
@@ -0,0 +1,98 @@
+/*
+-----------------------------------------------------------------------
+Copyright: 2010-2015, iMinds-Vision Lab, University of Antwerp
+ 2014-2015, CWI, Amsterdam
+
+Contact: astra@uantwerpen.be
+Website: http://sf.net/projects/astra-toolbox
+
+This file is part of the ASTRA Toolbox.
+
+
+The ASTRA Toolbox is free software: you can redistribute it and/or modify
+it under the terms of the GNU General Public License as published by
+the Free Software Foundation, either version 3 of the License, or
+(at your option) any later version.
+
+The ASTRA Toolbox is distributed in the hope that it will be useful,
+but WITHOUT ANY WARRANTY; without even the implied warranty of
+MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+GNU General Public License for more details.
+
+You should have received a copy of the GNU General Public License
+along with the ASTRA Toolbox. If not, see <http://www.gnu.org/licenses/>.
+
+-----------------------------------------------------------------------
+$Id$
+*/
+
+#include "astra/Float32Data3DGPU.h"
+
+namespace astra {
+
+//----------------------------------------------------------------------------------------
+// Default constructor.
+CFloat32Data3DGPU::CFloat32Data3DGPU()
+{
+ _clear();
+ m_bInitialized = false;
+}
+
+//----------------------------------------------------------------------------------------
+// Destructor.
+CFloat32Data3DGPU::~CFloat32Data3DGPU()
+{
+ if (m_bInitialized)
+ {
+ _unInit();
+ }
+}
+
+//----------------------------------------------------------------------------------------
+// Initializes an instance of the CFloat32Data3DGPU class with pre-allocated memory
+bool CFloat32Data3DGPU::_initialize(int _iWidth, int _iHeight, int _iDepth, astraCUDA3d::MemHandle3D _hnd)
+{
+ // basic checks
+ ASTRA_ASSERT(_iWidth > 0);
+ ASTRA_ASSERT(_iHeight > 0);
+ ASTRA_ASSERT(_iDepth > 0);
+ //ASTRA_ASSERT(_pCustomMemory != NULL);
+
+ if (m_bInitialized) {
+ _unInit();
+ }
+
+ // calculate size
+ m_iWidth = _iWidth;
+ m_iHeight = _iHeight;
+ m_iDepth = _iDepth;
+ m_iSize = (size_t)m_iWidth * m_iHeight * m_iDepth;
+
+ m_hnd = _hnd;
+
+ // initialization complete
+ return true;
+}
+//----------------------------------------------------------------------------------------
+// Clear all member variables, setting all numeric variables to 0 and all pointers to NULL.
+void CFloat32Data3DGPU::_clear()
+{
+ m_iWidth = 0;
+ m_iHeight = 0;
+ m_iDepth = 0;
+ m_iSize = 0;
+
+ m_hnd.d.reset();
+}
+
+//----------------------------------------------------------------------------------------
+// Un-initialize the object, bringing it back in the unitialized state.
+void CFloat32Data3DGPU::_unInit()
+{
+ ASTRA_ASSERT(m_bInitialized);
+
+ _clear();
+ m_bInitialized = false;
+}
+
+} // end namespace astra
diff --git a/src/Float32Data3DMemory.cpp b/src/Float32Data3DMemory.cpp
index 95b1859..5c5c310 100644
--- a/src/Float32Data3DMemory.cpp
+++ b/src/Float32Data3DMemory.cpp
@@ -27,6 +27,7 @@ along with the ASTRA Toolbox. If not, see <http://www.gnu.org/licenses/>.
#include "astra/Float32Data3DMemory.h"
#include <iostream>
+#include <cstdlib>
namespace astra {
@@ -75,10 +76,6 @@ bool CFloat32Data3DMemory::_initialize(int _iWidth, int _iHeight, int _iDepth)
m_pCustomMemory = 0;
_allocateData();
- // set minmax to default values
- m_fGlobalMin = 0.0;
- m_fGlobalMax = 0.0;
-
// initialization complete
return true;
@@ -166,7 +163,7 @@ bool CFloat32Data3DMemory::_initialize(int _iWidth, int _iHeight, int _iDepth, C
ASTRA_ASSERT(_iWidth > 0);
ASTRA_ASSERT(_iHeight > 0);
ASTRA_ASSERT(_iDepth > 0);
- ASTRA_ASSERT(_pCustomMemory != NULL);
+ //ASTRA_ASSERT(_pCustomMemory != NULL);
if (m_bInitialized) {
_unInit();
@@ -272,9 +269,6 @@ void CFloat32Data3DMemory::_clear()
m_ppfDataRowInd = NULL;
m_pppfDataSliceInd = NULL;
m_pCustomMemory = NULL;
-
- //m_fGlobalMin = 0.0f;
- //m_fGlobalMax = 0.0f;
}
//----------------------------------------------------------------------------------------
@@ -289,37 +283,6 @@ void CFloat32Data3DMemory::_unInit()
}
//----------------------------------------------------------------------------------------
-// Update data statistics, such as minimum and maximum value, after the data has been modified.
-void CFloat32Data3DMemory::updateStatistics()
-{
- _computeGlobalMinMax();
-}
-
-//----------------------------------------------------------------------------------------
-// Find the minimum and maximum data value.
-void CFloat32Data3DMemory::_computeGlobalMinMax()
-{
- // basic checks
- ASTRA_ASSERT(m_bInitialized);
- ASTRA_ASSERT(m_pfData != NULL);
- ASTRA_ASSERT(m_iSize > 0);
-
- // initial values
- m_fGlobalMin = m_pfData[0];
- m_fGlobalMax = m_pfData[0];
-
- // loop
- size_t i;
- float32 v;
- for (i = 0; i < m_iSize; ++i)
- {
- v = m_pfData[i];
- if (v < m_fGlobalMin) m_fGlobalMin = v;
- if (v > m_fGlobalMax) m_fGlobalMax = v;
- }
-}
-
-//----------------------------------------------------------------------------------------
// Copy the data block pointed to by _pfData to the data block pointed to by m_pfData.
void CFloat32Data3DMemory::copyData(const float32* _pfData, size_t _iSize)
{
diff --git a/src/Float32ProjectionData3D.cpp b/src/Float32ProjectionData3D.cpp
index c751c58..ba41e10 100644
--- a/src/Float32ProjectionData3D.cpp
+++ b/src/Float32ProjectionData3D.cpp
@@ -47,232 +47,6 @@ CFloat32ProjectionData3D::~CFloat32ProjectionData3D() {
m_pGeometry = 0;
}
-CFloat32ProjectionData3D& CFloat32ProjectionData3D::operator+=(const CFloat32ProjectionData3D& _data)
-{
- CProjectionGeometry3D * pThisGeometry = getGeometry();
-
- int iProjectionCount = pThisGeometry->getProjectionCount();
- int iDetectorCount = pThisGeometry->getDetectorTotCount();
-#ifdef _DEBUG
- CProjectionGeometry3D * pDataGeometry = _data.getGeometry();
- int iDataProjectionDetectorCount = pDataGeometry->getDetectorTotCount();
-
- ASTRA_ASSERT(iProjectionCount == pDataGeometry->getProjectionCount());
- ASTRA_ASSERT(iDetectorCount == iDataProjectionDetectorCount);
-#endif
-
- for(int iProjectionIndex = 0; iProjectionIndex < iProjectionCount; iProjectionIndex++)
- {
- CFloat32VolumeData2D * pThisProjection = fetchProjection(iProjectionIndex);
- CFloat32VolumeData2D * pDataProjection = _data.fetchProjection(iProjectionIndex);
-
- for(int iDetectorIndex = 0; iDetectorIndex < iDetectorCount; iDetectorIndex++)
- {
- float32 fThisValue = pThisProjection->getData()[iDetectorIndex];
- float32 fDataValue = pDataProjection->getDataConst()[iDetectorIndex];
-
- fThisValue += fDataValue;
-
- pThisProjection->getData()[iDetectorIndex] = fThisValue;
- }
-
- returnProjection(iProjectionIndex, pThisProjection);
-
- delete pThisProjection;
- delete pDataProjection;
- }
-
- return *this;
-}
-
-CFloat32ProjectionData3D& CFloat32ProjectionData3D::operator-=(const CFloat32ProjectionData3D& _data)
-{
- CProjectionGeometry3D * pThisGeometry = getGeometry();
-
- int iProjectionCount = pThisGeometry->getProjectionCount();
- int iDetectorCount = pThisGeometry->getDetectorTotCount();
-#ifdef _DEBUG
- CProjectionGeometry3D * pDataGeometry = _data.getGeometry();
- int iDataProjectionDetectorCount = pDataGeometry->getDetectorTotCount();
-
- ASTRA_ASSERT(iProjectionCount == pDataGeometry->getProjectionCount());
- ASTRA_ASSERT(iDetectorCount == iDataProjectionDetectorCount);
-#endif
-
- for(int iProjectionIndex = 0; iProjectionIndex < iProjectionCount; iProjectionIndex++)
- {
- CFloat32VolumeData2D * pThisProjection = fetchProjection(iProjectionIndex);
- CFloat32VolumeData2D * pDataProjection = _data.fetchProjection(iProjectionIndex);
-
- for(int iDetectorIndex = 0; iDetectorIndex < iDetectorCount; iDetectorIndex++)
- {
- float32 fThisValue = pThisProjection->getData()[iDetectorIndex];
- float32 fDataValue = pDataProjection->getDataConst()[iDetectorIndex];
-
- fThisValue -= fDataValue;
-
- pThisProjection->getData()[iDetectorIndex] = fThisValue;
- }
-
- returnProjection(iProjectionIndex, pThisProjection);
-
- delete pThisProjection;
- delete pDataProjection;
- }
-
- return *this;
-}
-
-CFloat32ProjectionData3D& CFloat32ProjectionData3D::operator*=(const CFloat32ProjectionData3D& _data)
-{
- CProjectionGeometry3D * pThisGeometry = getGeometry();
-
- int iProjectionCount = pThisGeometry->getProjectionCount();
- int iDetectorCount = pThisGeometry->getDetectorTotCount();
-#ifdef _DEBUG
- CProjectionGeometry3D * pDataGeometry = _data.getGeometry();
- int iDataProjectionDetectorCount = pDataGeometry->getDetectorTotCount();
-
- ASTRA_ASSERT(iProjectionCount == pDataGeometry->getProjectionCount());
- ASTRA_ASSERT(iDetectorCount == iDataProjectionDetectorCount);
-#endif
-
- for(int iProjectionIndex = 0; iProjectionIndex < iProjectionCount; iProjectionIndex++)
- {
- CFloat32VolumeData2D * pThisProjection = fetchProjection(iProjectionIndex);
- CFloat32VolumeData2D * pDataProjection = _data.fetchProjection(iProjectionIndex);
-
- for(int iDetectorIndex = 0; iDetectorIndex < iDetectorCount; iDetectorIndex++)
- {
- float32 fThisValue = pThisProjection->getData()[iDetectorIndex];
- float32 fDataValue = pDataProjection->getDataConst()[iDetectorIndex];
-
- fThisValue *= fDataValue;
-
- pThisProjection->getData()[iDetectorIndex] = fThisValue;
- }
-
- returnProjection(iProjectionIndex, pThisProjection);
-
- delete pThisProjection;
- delete pDataProjection;
- }
-
- return *this;
-}
-
-CFloat32ProjectionData3D& CFloat32ProjectionData3D::operator*=(const float32& _fScalar)
-{
- CProjectionGeometry3D * pThisGeometry = getGeometry();
-
- int iProjectionCount = pThisGeometry->getProjectionCount();
- int iDetectorCount = pThisGeometry->getDetectorTotCount();
-
- for(int iProjectionIndex = 0; iProjectionIndex < iProjectionCount; iProjectionIndex++)
- {
- CFloat32VolumeData2D * pThisProjection = fetchProjection(iProjectionIndex);
-
- for(int iDetectorIndex = 0; iDetectorIndex < iDetectorCount; iDetectorIndex++)
- {
- float32 fThisValue = pThisProjection->getData()[iDetectorIndex];
-
- fThisValue *= _fScalar;
-
- pThisProjection->getData()[iDetectorIndex] = fThisValue;
- }
-
- returnProjection(iProjectionIndex, pThisProjection);
-
- delete pThisProjection;
- }
-
- return *this;
-}
-
-CFloat32ProjectionData3D& CFloat32ProjectionData3D::operator/=(const float32& _fScalar)
-{
- CProjectionGeometry3D * pThisGeometry = getGeometry();
-
- int iProjectionCount = pThisGeometry->getProjectionCount();
- int iDetectorCount = pThisGeometry->getDetectorTotCount();
-
- for(int iProjectionIndex = 0; iProjectionIndex < iProjectionCount; iProjectionIndex++)
- {
- CFloat32VolumeData2D * pThisProjection = fetchProjection(iProjectionIndex);
-
- for(int iDetectorIndex = 0; iDetectorIndex < iDetectorCount; iDetectorIndex++)
- {
- float32 fThisValue = pThisProjection->getData()[iDetectorIndex];
-
- fThisValue /= _fScalar;
-
- pThisProjection->getData()[iDetectorIndex] = fThisValue;
- }
-
- returnProjection(iProjectionIndex, pThisProjection);
-
- delete pThisProjection;
- }
-
- return *this;
-}
-
-CFloat32ProjectionData3D& CFloat32ProjectionData3D::operator+=(const float32& _fScalar)
-{
- CProjectionGeometry3D * pThisGeometry = getGeometry();
-
- int iProjectionCount = pThisGeometry->getProjectionCount();
- int iDetectorCount = pThisGeometry->getDetectorTotCount();
-
- for(int iProjectionIndex = 0; iProjectionIndex < iProjectionCount; iProjectionIndex++)
- {
- CFloat32VolumeData2D * pThisProjection = fetchProjection(iProjectionIndex);
-
- for(int iDetectorIndex = 0; iDetectorIndex < iDetectorCount; iDetectorIndex++)
- {
- float32 fThisValue = pThisProjection->getData()[iDetectorIndex];
-
- fThisValue += _fScalar;
-
- pThisProjection->getData()[iDetectorIndex] = fThisValue;
- }
-
- returnProjection(iProjectionIndex, pThisProjection);
-
- delete pThisProjection;
- }
-
- return *this;
-}
-
-CFloat32ProjectionData3D& CFloat32ProjectionData3D::operator-=(const float32& _fScalar)
-{
- CProjectionGeometry3D * pThisGeometry = getGeometry();
-
- int iProjectionCount = pThisGeometry->getProjectionCount();
- int iDetectorCount = pThisGeometry->getDetectorTotCount();
-
- for(int iProjectionIndex = 0; iProjectionIndex < iProjectionCount; iProjectionIndex++)
- {
- CFloat32VolumeData2D * pThisProjection = fetchProjection(iProjectionIndex);
-
- for(int iDetectorIndex = 0; iDetectorIndex < iDetectorCount; iDetectorIndex++)
- {
- float32 fThisValue = pThisProjection->getData()[iDetectorIndex];
-
- fThisValue -= _fScalar;
-
- pThisProjection->getData()[iDetectorIndex] = fThisValue;
- }
-
- returnProjection(iProjectionIndex, pThisProjection);
-
- delete pThisProjection;
- }
-
- return *this;
-}
-
void CFloat32ProjectionData3D::changeGeometry(CProjectionGeometry3D* _pGeometry)
{
if (!m_bInitialized) return;
diff --git a/src/Float32ProjectionData3DGPU.cpp b/src/Float32ProjectionData3DGPU.cpp
new file mode 100644
index 0000000..0e063d6
--- /dev/null
+++ b/src/Float32ProjectionData3DGPU.cpp
@@ -0,0 +1,71 @@
+/*
+-----------------------------------------------------------------------
+Copyright: 2010-2015, iMinds-Vision Lab, University of Antwerp
+ 2014-2015, CWI, Amsterdam
+
+Contact: astra@uantwerpen.be
+Website: http://sf.net/projects/astra-toolbox
+
+This file is part of the ASTRA Toolbox.
+
+
+The ASTRA Toolbox is free software: you can redistribute it and/or modify
+it under the terms of the GNU General Public License as published by
+the Free Software Foundation, either version 3 of the License, or
+(at your option) any later version.
+
+The ASTRA Toolbox is distributed in the hope that it will be useful,
+but WITHOUT ANY WARRANTY; without even the implied warranty of
+MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+GNU General Public License for more details.
+
+You should have received a copy of the GNU General Public License
+along with the ASTRA Toolbox. If not, see <http://www.gnu.org/licenses/>.
+
+-----------------------------------------------------------------------
+$Id$
+*/
+
+#include "astra/Float32ProjectionData3DGPU.h"
+
+using namespace std;
+
+namespace astra
+{
+
+//----------------------------------------------------------------------------------------
+// Default constructor
+CFloat32ProjectionData3DGPU::CFloat32ProjectionData3DGPU() :
+ CFloat32Data3DGPU()
+{
+ m_pGeometry = NULL;
+ m_bInitialized = false;
+}
+
+//----------------------------------------------------------------------------------------
+// Create an instance of the CFloat32ProjectionData2D class with pre-allocated data
+CFloat32ProjectionData3DGPU::CFloat32ProjectionData3DGPU(CProjectionGeometry3D* _pGeometry, astraCUDA3d::MemHandle3D _hnd)
+{
+ m_bInitialized = false;
+ m_bInitialized = initialize(_pGeometry, _hnd);
+}
+
+
+//----------------------------------------------------------------------------------------
+// Destructor
+CFloat32ProjectionData3DGPU::~CFloat32ProjectionData3DGPU()
+{
+ delete m_pGeometry;
+ m_pGeometry = 0;
+}
+
+//----------------------------------------------------------------------------------------
+// Initialization
+bool CFloat32ProjectionData3DGPU::initialize(CProjectionGeometry3D* _pGeometry, astraCUDA3d::MemHandle3D _hnd)
+{
+ m_pGeometry = _pGeometry->clone();
+ m_bInitialized = _initialize(m_pGeometry->getDetectorColCount(), m_pGeometry->getProjectionCount(), m_pGeometry->getDetectorRowCount(), _hnd);
+ return m_bInitialized;
+}
+
+} // end namespace astra
diff --git a/src/Float32ProjectionData3DMemory.cpp b/src/Float32ProjectionData3DMemory.cpp
index f42e216..69033d5 100644
--- a/src/Float32ProjectionData3DMemory.cpp
+++ b/src/Float32ProjectionData3DMemory.cpp
@@ -114,7 +114,7 @@ bool CFloat32ProjectionData3DMemory::initialize(CProjectionGeometry3D* _pGeometr
//----------------------------------------------------------------------------------------
// Initialization
-bool CFloat32ProjectionData3DMemory::initialize(CProjectionGeometry3D* _pGeometry, CFloat32CustomMemory* _pCustomMemory)
+bool CFloat32ProjectionData3DMemory::initialize(CProjectionGeometry3D* _pGeometry, CFloat32CustomMemory* _pCustomMemory)
{
m_pGeometry = _pGeometry->clone();
m_bInitialized = _initialize(m_pGeometry->getDetectorColCount(), m_pGeometry->getProjectionCount(), m_pGeometry->getDetectorRowCount(), _pCustomMemory);
@@ -131,102 +131,6 @@ CFloat32ProjectionData3DMemory::~CFloat32ProjectionData3DMemory()
}
//----------------------------------------------------------------------------------------
-// Fetch a projection
-CFloat32VolumeData2D* CFloat32ProjectionData3DMemory::fetchProjection(int _iProjectionNr) const
-{
- // fetch slice of the geometry
- CVolumeGeometry2D volGeom(m_pGeometry->getDetectorColCount(), m_pGeometry->getDetectorRowCount());
- // create new volume data
- CFloat32VolumeData2D* res = new CFloat32VolumeData2D(&volGeom);
- // copy data
- int row, col;
- for (row = 0; row < m_pGeometry->getDetectorRowCount(); ++row) {
- for (col = 0; col < m_pGeometry->getDetectorColCount(); ++col) {
- res->getData()[row*m_pGeometry->getDetectorColCount() + col] =
- m_pfData[_iProjectionNr * m_pGeometry->getDetectorColCount() + m_pGeometry->getDetectorColCount()* m_pGeometry->getProjectionCount() * row + col];
- }
- }
- // return
- return res;
-}
-
-//----------------------------------------------------------------------------------------
-// Return a projection
-void CFloat32ProjectionData3DMemory::returnProjection(int _iProjectionNr, CFloat32VolumeData2D* _pProjection)
-{
- /// TODO: check geometry
- // copy data
- int row, col;
- for (row = 0; row < m_pGeometry->getDetectorRowCount(); ++row) {
- for (col = 0; col < m_pGeometry->getDetectorColCount(); ++col) {
- m_pfData[_iProjectionNr * m_pGeometry->getDetectorColCount() + m_pGeometry->getDetectorColCount()* m_pGeometry->getProjectionCount() * row + col] =
- _pProjection->getData()[row*m_pGeometry->getDetectorColCount() + col];
- }
- }
-}
-
-//----------------------------------------------------------------------------------------
-// Fetch a sinogram
-CFloat32ProjectionData2D* CFloat32ProjectionData3DMemory::fetchSinogram(int _iSliceNr) const
-{
- CParallelProjectionGeometry3D * pParallelProjGeo = (CParallelProjectionGeometry3D *)m_pGeometry;
- CParallelProjectionGeometry2D * pProjGeo2D = pParallelProjGeo->createProjectionGeometry2D();
-
- // create new projection data
- CFloat32ProjectionData2D* res = new CFloat32ProjectionData2D(pProjGeo2D);
- // copy data
- int row, col;
-
- int iDetectorColumnCount = m_pGeometry->getDetectorColCount();
- int iProjectionAngleCount = m_pGeometry->getProjectionCount();
-
- for (row = 0; row < m_pGeometry->getProjectionCount(); ++row) {
- for (col = 0; col < m_pGeometry->getDetectorColCount(); ++col)
- {
- int iTargetIndex = row * iDetectorColumnCount + col;
- int iSourceIndex = _iSliceNr * iDetectorColumnCount * iProjectionAngleCount + row * iDetectorColumnCount + col;
-
- float32 fStoredValue = m_pfData[iSourceIndex];
-
- res->getData()[iTargetIndex] = fStoredValue;
- }
- }
-
- delete pProjGeo2D;
-
- // return
- return res;
-}
-
-//----------------------------------------------------------------------------------------
-// Return a sinogram
-void CFloat32ProjectionData3DMemory::returnSinogram(int _iSliceNr, CFloat32ProjectionData2D* _pSinogram2D)
-{
- /// TODO: check geometry
- // copy data
- int row, col;
- for (row = 0; row < m_pGeometry->getProjectionCount(); ++row) {
- for (col = 0; col < m_pGeometry->getDetectorColCount(); ++col) {
- m_pfData[_iSliceNr*m_pGeometry->getDetectorColCount()*m_pGeometry->getProjectionCount() + row*m_pGeometry->getDetectorColCount() + col] =
- _pSinogram2D->getData()[row*m_pGeometry->getDetectorColCount() + col];
- }
- }
-}
-
-//----------------------------------------------------------------------------------------
-// Returns a specific value
-float32 CFloat32ProjectionData3DMemory::getDetectorValue(int _iIndex)
-{
- return m_pfData[_iIndex];
-}
-
-//----------------------------------------------------------------------------------------
-// Sets a specific value
-void CFloat32ProjectionData3DMemory::setDetectorValue(int _iIndex, float32 _fValue)
-{
- m_pfData[_iIndex] = _fValue;
-}
-//----------------------------------------------------------------------------------------
CFloat32ProjectionData3DMemory& CFloat32ProjectionData3DMemory::operator=(const CFloat32ProjectionData3DMemory& _dataIn)
{
diff --git a/src/Float32VolumeData3D.cpp b/src/Float32VolumeData3D.cpp
index bf7eced..96e6940 100644
--- a/src/Float32VolumeData3D.cpp
+++ b/src/Float32VolumeData3D.cpp
@@ -43,228 +43,6 @@ CFloat32VolumeData3D::~CFloat32VolumeData3D() {
}
-CFloat32VolumeData3D& CFloat32VolumeData3D::operator+=(const CFloat32VolumeData3D& _data)
-{
- CVolumeGeometry3D * pThisGeometry = getGeometry();
-
- int iSliceCount = pThisGeometry->getGridSliceCount();
-#ifdef _DEBUG
- CVolumeGeometry3D * pDataGeometry = _data.getGeometry();
- int iThisSlicePixelCount = pThisGeometry->getGridRowCount() * pThisGeometry->getGridColCount();
- int iDataSlicePixelCount = pDataGeometry->getGridRowCount() * pDataGeometry->getGridColCount();
-
- ASTRA_ASSERT(iSliceCount == pDataGeometry->getGridSliceCount());
- ASTRA_ASSERT(iThisSlicePixelCount == iDataSlicePixelCount);
-#endif
-
- for(int iSliceIndex = 0; iSliceIndex < iSliceCount; iSliceIndex++)
- {
- CFloat32VolumeData2D * pThisProjection = fetchSliceZ(iSliceIndex);
- CFloat32VolumeData2D * pDataProjection = _data.fetchSliceZ(iSliceIndex);
-
- for(int iDetectorIndex = 0; iDetectorIndex < iDetectorIndex; iDetectorIndex++)
- {
- float32 fThisValue = pThisProjection->getData()[iDetectorIndex];
- float32 fDataValue = pDataProjection->getDataConst()[iDetectorIndex];
-
- fThisValue += fDataValue;
-
- pThisProjection->getData()[iDetectorIndex] = fThisValue;
- }
-
- returnSliceZ(iSliceIndex, pThisProjection);
-
- delete pThisProjection;
- delete pDataProjection;
- }
-
- return *this;
-}
-
-CFloat32VolumeData3D& CFloat32VolumeData3D::operator-=(const CFloat32VolumeData3D& _data)
-{
- CVolumeGeometry3D * pThisGeometry = getGeometry();
-
- int iSliceCount = pThisGeometry->getGridSliceCount();
-#ifdef _DEBUG
- CVolumeGeometry3D * pDataGeometry = _data.getGeometry();
- int iThisSlicePixelCount = pThisGeometry->getGridRowCount() * pThisGeometry->getGridColCount();
- int iDataSlicePixelCount = pDataGeometry->getGridRowCount() * pDataGeometry->getGridColCount();
-
- ASTRA_ASSERT(iSliceCount == pDataGeometry->getGridSliceCount());
- ASTRA_ASSERT(iThisSlicePixelCount == iDataSlicePixelCount);
-#endif
-
- for(int iSliceIndex = 0; iSliceIndex < iSliceCount; iSliceIndex++)
- {
- CFloat32VolumeData2D * pThisProjection = fetchSliceZ(iSliceIndex);
- CFloat32VolumeData2D * pDataProjection = _data.fetchSliceZ(iSliceIndex);
-
- for(int iDetectorIndex = 0; iDetectorIndex < iDetectorIndex; iDetectorIndex++)
- {
- float32 fThisValue = pThisProjection->getData()[iDetectorIndex];
- float32 fDataValue = pDataProjection->getDataConst()[iDetectorIndex];
-
- fThisValue -= fDataValue;
-
- pThisProjection->getData()[iDetectorIndex] = fThisValue;
- }
-
- returnSliceZ(iSliceIndex, pThisProjection);
-
- delete pThisProjection;
- delete pDataProjection;
- }
-
- return *this;
-}
-
-CFloat32VolumeData3D& CFloat32VolumeData3D::operator*=(const CFloat32VolumeData3D& _data)
-{
- CVolumeGeometry3D * pThisGeometry = getGeometry();
-
- int iSliceCount = pThisGeometry->getGridSliceCount();
-#ifdef _DEBUG
- CVolumeGeometry3D * pDataGeometry = _data.getGeometry();
- int iThisSlicePixelCount = pThisGeometry->getGridRowCount() * pThisGeometry->getGridColCount();
- int iDataSlicePixelCount = pDataGeometry->getGridRowCount() * pDataGeometry->getGridColCount();
-
- ASTRA_ASSERT(iSliceCount == pDataGeometry->getGridSliceCount());
- ASTRA_ASSERT(iThisSlicePixelCount == iDataSlicePixelCount);
-#endif
-
- for(int iSliceIndex = 0; iSliceIndex < iSliceCount; iSliceIndex++)
- {
- CFloat32VolumeData2D * pThisProjection = fetchSliceZ(iSliceIndex);
- CFloat32VolumeData2D * pDataProjection = _data.fetchSliceZ(iSliceIndex);
-
- for(int iDetectorIndex = 0; iDetectorIndex < iDetectorIndex; iDetectorIndex++)
- {
- float32 fThisValue = pThisProjection->getData()[iDetectorIndex];
- float32 fDataValue = pDataProjection->getDataConst()[iDetectorIndex];
-
- fThisValue *= fDataValue;
-
- pThisProjection->getData()[iDetectorIndex] = fThisValue;
- }
-
- returnSliceZ(iSliceIndex, pThisProjection);
-
- delete pThisProjection;
- delete pDataProjection;
- }
-
- return *this;
-}
-
-CFloat32VolumeData3D& CFloat32VolumeData3D::operator*=(const float32& _fScalar)
-{
- CVolumeGeometry3D * pThisGeometry = getGeometry();
-
- int iSliceCount = pThisGeometry->getGridSliceCount();
-
- for(int iSliceIndex = 0; iSliceIndex < iSliceCount; iSliceIndex++)
- {
- CFloat32VolumeData2D * pThisProjection = fetchSliceZ(iSliceIndex);
-
- for(int iDetectorIndex = 0; iDetectorIndex < iDetectorIndex; iDetectorIndex++)
- {
- float32 fThisValue = pThisProjection->getData()[iDetectorIndex];
-
- fThisValue *= _fScalar;
-
- pThisProjection->getData()[iDetectorIndex] = fThisValue;
- }
-
- returnSliceZ(iSliceIndex, pThisProjection);
-
- delete pThisProjection;
- }
-
- return *this;
-}
-
-CFloat32VolumeData3D& CFloat32VolumeData3D::operator/=(const float32& _fScalar)
-{
- CVolumeGeometry3D * pThisGeometry = getGeometry();
-
- int iSliceCount = pThisGeometry->getGridSliceCount();
-
- for(int iSliceIndex = 0; iSliceIndex < iSliceCount; iSliceIndex++)
- {
- CFloat32VolumeData2D * pThisProjection = fetchSliceZ(iSliceIndex);
-
- for(int iDetectorIndex = 0; iDetectorIndex < iDetectorIndex; iDetectorIndex++)
- {
- float32 fThisValue = pThisProjection->getData()[iDetectorIndex];
-
- fThisValue /= _fScalar;
-
- pThisProjection->getData()[iDetectorIndex] = fThisValue;
- }
-
- returnSliceZ(iSliceIndex, pThisProjection);
-
- delete pThisProjection;
- }
-
- return *this;
-}
-
-CFloat32VolumeData3D& CFloat32VolumeData3D::operator+=(const float32& _fScalar)
-{
- CVolumeGeometry3D * pThisGeometry = getGeometry();
-
- int iSliceCount = pThisGeometry->getGridSliceCount();
-
- for(int iSliceIndex = 0; iSliceIndex < iSliceCount; iSliceIndex++)
- {
- CFloat32VolumeData2D * pThisProjection = fetchSliceZ(iSliceIndex);
-
- for(int iDetectorIndex = 0; iDetectorIndex < iDetectorIndex; iDetectorIndex++)
- {
- float32 fThisValue = pThisProjection->getData()[iDetectorIndex];
-
- fThisValue += _fScalar;
-
- pThisProjection->getData()[iDetectorIndex] = fThisValue;
- }
-
- returnSliceZ(iSliceIndex, pThisProjection);
-
- delete pThisProjection;
- }
-
- return *this;
-}
-
-CFloat32VolumeData3D& CFloat32VolumeData3D::operator-=(const float32& _fScalar)
-{
- CVolumeGeometry3D * pThisGeometry = getGeometry();
-
- int iSliceCount = pThisGeometry->getGridSliceCount();
-
- for(int iSliceIndex = 0; iSliceIndex < iSliceCount; iSliceIndex++)
- {
- CFloat32VolumeData2D * pThisProjection = fetchSliceZ(iSliceIndex);
-
- for(int iDetectorIndex = 0; iDetectorIndex < iDetectorIndex; iDetectorIndex++)
- {
- float32 fThisValue = pThisProjection->getData()[iDetectorIndex];
-
- fThisValue -= _fScalar;
-
- pThisProjection->getData()[iDetectorIndex] = fThisValue;
- }
-
- returnSliceZ(iSliceIndex, pThisProjection);
-
- delete pThisProjection;
- }
-
- return *this;
-}
-
void CFloat32VolumeData3D::changeGeometry(CVolumeGeometry3D* _pGeometry)
{
if (!m_bInitialized) return;
diff --git a/src/Float32VolumeData3DGPU.cpp b/src/Float32VolumeData3DGPU.cpp
new file mode 100644
index 0000000..82a222f
--- /dev/null
+++ b/src/Float32VolumeData3DGPU.cpp
@@ -0,0 +1,71 @@
+/*
+-----------------------------------------------------------------------
+Copyright: 2010-2015, iMinds-Vision Lab, University of Antwerp
+ 2014-2015, CWI, Amsterdam
+
+Contact: astra@uantwerpen.be
+Website: http://sf.net/projects/astra-toolbox
+
+This file is part of the ASTRA Toolbox.
+
+
+The ASTRA Toolbox is free software: you can redistribute it and/or modify
+it under the terms of the GNU General Public License as published by
+the Free Software Foundation, either version 3 of the License, or
+(at your option) any later version.
+
+The ASTRA Toolbox is distributed in the hope that it will be useful,
+but WITHOUT ANY WARRANTY; without even the implied warranty of
+MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+GNU General Public License for more details.
+
+You should have received a copy of the GNU General Public License
+along with the ASTRA Toolbox. If not, see <http://www.gnu.org/licenses/>.
+
+-----------------------------------------------------------------------
+$Id$
+*/
+
+#include "astra/Float32VolumeData3DGPU.h"
+
+using namespace std;
+
+namespace astra
+{
+
+//----------------------------------------------------------------------------------------
+// Default constructor
+CFloat32VolumeData3DGPU::CFloat32VolumeData3DGPU() :
+ CFloat32Data3DGPU()
+{
+ m_pGeometry = NULL;
+ m_bInitialized = false;
+}
+
+//----------------------------------------------------------------------------------------
+// Create an instance of the CFloat32VolumeData2D class with pre-allocated data
+CFloat32VolumeData3DGPU::CFloat32VolumeData3DGPU(CVolumeGeometry3D* _pGeometry, astraCUDA3d::MemHandle3D _hnd)
+{
+ m_bInitialized = false;
+ m_bInitialized = initialize(_pGeometry, _hnd);
+}
+
+
+//----------------------------------------------------------------------------------------
+// Destructor
+CFloat32VolumeData3DGPU::~CFloat32VolumeData3DGPU()
+{
+ delete m_pGeometry;
+ m_pGeometry = 0;
+}
+
+//----------------------------------------------------------------------------------------
+// Initialization
+bool CFloat32VolumeData3DGPU::initialize(CVolumeGeometry3D* _pGeometry, astraCUDA3d::MemHandle3D _hnd)
+{
+ m_pGeometry = _pGeometry->clone();
+ m_bInitialized = _initialize(m_pGeometry->getGridColCount(), m_pGeometry->getGridRowCount(), m_pGeometry->getGridSliceCount(), _hnd);
+ return m_bInitialized;
+}
+
+} // end namespace astra
diff --git a/src/Float32VolumeData3DMemory.cpp b/src/Float32VolumeData3DMemory.cpp
index ba39eaa..27ae87b 100644
--- a/src/Float32VolumeData3DMemory.cpp
+++ b/src/Float32VolumeData3DMemory.cpp
@@ -114,103 +114,13 @@ bool CFloat32VolumeData3DMemory::initialize(CVolumeGeometry3D* _pGeometry, float
}
//----------------------------------------------------------------------------------------
// Initialization
-bool CFloat32VolumeData3DMemory::initialize(CVolumeGeometry3D* _pGeometry, CFloat32CustomMemory* _pCustomMemory)
+bool CFloat32VolumeData3DMemory::initialize(CVolumeGeometry3D* _pGeometry, CFloat32CustomMemory* _pCustomMemory)
{
m_pGeometry = _pGeometry->clone();
m_bInitialized = _initialize(m_pGeometry->getGridColCount(), m_pGeometry->getGridRowCount(), m_pGeometry->getGridSliceCount(), _pCustomMemory);
return m_bInitialized;
}
-
-//----------------------------------------------------------------------------------------
-// Fetch a slice
-CFloat32VolumeData2D * CFloat32VolumeData3DMemory::fetchSliceZ(int _iSliceIndex) const
-{
- // fetch slice of the geometry
- int iRowCount = m_pGeometry->getGridRowCount();
- int iColumnCount = m_pGeometry->getGridColCount();
- CVolumeGeometry2D volGeom(iColumnCount, iRowCount);
-
- // create new volume data
- CFloat32VolumeData2D* res = new CFloat32VolumeData2D(&volGeom);
-
- // copy data
- float * pfTargetData = res->getData();
- for(int iRowIndex = 0; iRowIndex < iRowCount; iRowIndex++)
- {
- for(int iColumnIndex = 0; iColumnIndex < iColumnCount; iColumnIndex++)
- {
- int iSourceIndex = _iSliceIndex * iColumnCount * iRowCount + iRowIndex * iColumnCount + iColumnIndex;
- int iTargetIndex = iRowIndex * iColumnCount + iColumnIndex;
- float fStoredValue = m_pfData[iSourceIndex];
- pfTargetData[iTargetIndex] = fStoredValue;
- }
- }
- // return
- return res;
-}
-
-//----------------------------------------------------------------------------------------
-// Return a slice
-void CFloat32VolumeData3DMemory::returnSliceZ(int _iSliceIndex, CFloat32VolumeData2D * _pSlice)
-{
- int iRowCount = _pSlice->getGeometry()->getGridRowCount();
- int iColumnCount = _pSlice->getGeometry()->getGridColCount();
-
- assert(iRowCount == m_pGeometry->getGridRowCount());
- assert(iColumnCount == m_pGeometry->getGridColCount());
-
- for(int iRowIndex = 0; iRowIndex < iRowCount; iRowIndex++)
- {
- for(int iColumnIndex = 0; iColumnIndex < iColumnCount; iColumnIndex++)
- {
- int iSourceIndex = iRowIndex * iColumnCount + iColumnIndex;
- int iTargetIndex = _iSliceIndex * iColumnCount * iRowCount + iRowIndex * iColumnCount + iColumnIndex;
- float fStoredValue = _pSlice->getDataConst()[iSourceIndex];
- m_pfData[iTargetIndex] = fStoredValue;
- }
- }
-}
-
-CFloat32VolumeData2D * CFloat32VolumeData3DMemory::fetchSliceX(int _iColumnIndex) const
-{
- // TODO:
- assert(false);
- return NULL;
-}
-
-CFloat32VolumeData2D * CFloat32VolumeData3DMemory::fetchSliceY(int _iRowIndex) const
-{
- // TODO:
- assert(false);
- return NULL;
-}
-
-void CFloat32VolumeData3DMemory::returnSliceX(int _iColumnIndex, CFloat32VolumeData2D * _pSliceData)
-{
- // TODO:
- assert(false);
-}
-
-void CFloat32VolumeData3DMemory::returnSliceY(int _iRowIndex, CFloat32VolumeData2D * _pSliceData)
-{
- // TODO:
- assert(false);
-}
-
-//----------------------------------------------------------------------------------------
-// Returns a specific value
-float32 CFloat32VolumeData3DMemory::getVoxelValue(int _iIndex)
-{
- return m_pfData[_iIndex];
-}
-
-//----------------------------------------------------------------------------------------
-// Sets a specific value
-void CFloat32VolumeData3DMemory::setVoxelValue(int _iIndex, float32 _fValue)
-{
- m_pfData[_iIndex] = _fValue;
-}
//----------------------------------------------------------------------------------------
CFloat32VolumeData3DMemory& CFloat32VolumeData3DMemory::operator=(const CFloat32VolumeData3DMemory& _dataIn)
generated by cgit v1.2.3 (git 2.25.1) at 2024-12-28 02:45:15 +0000