From 3d136b7c819b0b142ad056bf01c8c1191eea9ba0 Mon Sep 17 00:00:00 2001
From: "Daniel M. Pelt" <D.M.Pelt@cwi.nl>
Date: Fri, 17 Jul 2015 16:22:05 +0200
Subject: Fix numpy lapack loading when running in Matlab

---
 src/Globals.cpp         |  3 +++
 src/PluginAlgorithm.cpp | 29 +++++++++++++++++++++++++++++
 2 files changed, 32 insertions(+)

(limited to 'src')

diff --git a/src/Globals.cpp b/src/Globals.cpp
index 813f9c9..904a459 100644
--- a/src/Globals.cpp
+++ b/src/Globals.cpp
@@ -28,5 +28,8 @@ $Id$
 
 #include "astra/Globals.h"
 
+namespace astra{
+    bool running_in_matlab=false;
+}
 // nothing to see here :)
 
diff --git a/src/PluginAlgorithm.cpp b/src/PluginAlgorithm.cpp
index 8ba6631..c26ee3f 100644
--- a/src/PluginAlgorithm.cpp
+++ b/src/PluginAlgorithm.cpp
@@ -67,8 +67,37 @@ void CPluginAlgorithm::run(int _iNrIterations){
     Py_DECREF(retVal);
 }
 
+void fixLapackLoading(){
+    // When running in Matlab, we need to force numpy
+    // to use its internal lapack library instead of
+    // Matlab's MKL library to avoid errors. To do this,
+    // we set Python's dlopen flags to RTLD_NOW|RTLD_DEEPBIND
+    // and import 'numpy.linalg.lapack_lite' here. We reset
+    // Python's dlopen flags afterwards.
+    PyObject *sys = PyImport_ImportModule("sys");
+    if(sys!=NULL){
+        PyObject *curFlags = PyObject_CallMethod(sys,"getdlopenflags",NULL);
+        if(curFlags!=NULL){
+            PyObject *retVal = PyObject_CallMethod(sys, "setdlopenflags", "i",10);
+            if(retVal!=NULL){
+                PyObject *lapack = PyImport_ImportModule("numpy.linalg.lapack_lite");
+                if(lapack!=NULL){
+                    Py_DECREF(lapack);
+                }
+                PyObject_CallMethod(sys, "setdlopenflags", "O",curFlags);
+                Py_DECREF(retVal);
+            }
+            Py_DECREF(curFlags);
+        }
+        Py_DECREF(sys);
+    }
+}
+
 CPluginAlgorithmFactory::CPluginAlgorithmFactory(){
     Py_Initialize();
+#ifndef _MSC_VER
+    if(astra::running_in_matlab) fixLapackLoading();
+#endif
     pluginDict = PyDict_New();
     inspect = PyImport_ImportModule("inspect");
     six = PyImport_ImportModule("six");
-- 
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