install_type=@INSTALL_TYPE@ cuda=@HAVECUDA@ matlab=@HAVEMATLAB@ python=@HAVEPYTHON@ boostutf=@HAVEBOOSTUTF@ MATLAB_ROOT=@MATLAB_ROOT@ octave=@HAVEOCTAVE@ MKDIR=mkdir -p CXX=@CXX@ LD=@CXX@ SHELL=@SHELL@ INSTALL_SH=$(SHELL) $(srcdir)/install-sh TARGETS=libastra.la ifeq ($(matlab),yes) TARGETS+=mex endif ifeq ($(python),yes) TARGETS+=py endif ifeq ($(octave),yes) TARGETS+=oct endif all: $(TARGETS) prefix=@prefix@ exec_prefix=@exec_prefix@ datarootdir=@datarootdir@ srcdir=@srcdir@ abs_top_builddir=@abs_top_builddir@ VPATH=@VPATH_SRCDIR@/../.. CPPFLAGS=@SAVED_CPPFLAGS@ CXXFLAGS=@SAVED_CXXFLAGS@ NVCCFLAGS=@SAVED_NVCCFLAGS@ LDFLAGS=@SAVED_LDFLAGS@ LIBS=@SAVED_LIBS@ CXXFLAGS+=-g -O3 -Wall -Wshadow LIBS+=-lpthread LDFLAGS+=-g CPPFLAGS+=@CPPFLAGS_OS@ BOOSTUTF_LIBS=@LIBS_BOOSTUTF@ ifeq ($(cuda),yes) CPPFLAGS += @CPPFLAGS_CUDA@ -DASTRA_CUDA NVCCFLAGS += @NVCCFLAGS_EXTRA@ @CPPFLAGS_CUDA@ -I$(srcdir)/../.. -I$(srcdir)/../../include -DASTRA_CUDA LDFLAGS += @LDFLAGS_CUDA@ LIBS += -lcudart -lcufft NVCC = @NVCC@ endif ifeq ($(matlab),yes) # TODO: Do we also want -fopenmp for octave? CPPFLAGS+=-I$(MATLAB_ROOT)/extern/include -DMATLAB_MEX_FILE CXXFLAGS+=-fopenmp LDFLAGS+=-fopenmp endif # MODLDFLAGS are the base LDFLAGS for matlab, octave, python modules MODLDFLAGS=$(LDFLAGS) -L$(abs_top_builddir)/.libs ifeq ($(install_type),module) MODLDFLAGS+=-Wl,-rpath,'\$$ORIGIN' endif ifeq ($(python),yes) PYTHON = @PYTHON@ PYINCDIR := $(shell $(PYTHON) -c 'from __future__ import print_function; from distutils.sysconfig import get_python_inc; print(get_python_inc())') PYLIBVER = `basename $(PYINCDIR)` CPPFLAGS += -DASTRA_PYTHON -I$(PYINCDIR) PYCPPFLAGS := $(CPPFLAGS) PYCPPFLAGS += -I../include PYLDFLAGS = $(MODLDFLAGS) MODPYLIBS=-l$(PYLIBVER) endif # This is below where PYCPPFLAGS copies CPPFLAGS. The python code is built # from a different directory, so these relative includes would be wrong. CPPFLAGS+=-I$(srcdir)/../.. -I$(srcdir)/../../include -I$(srcdir)/../../lib/include ifeq ($(matlab),yes) MEXFLAGS = -cxx MEXLDFLAGS=\$$LDFLAGS $(MODLDFLAGS) MEXLIBS = -lut MEXSUFFIX = @MEXSUFFIX@ MEX = @MEX@ ifeq ($(cuda),yes) MEXFLAGS += -DASTRA_CUDA endif endif ifeq ($(octave),yes) OCTLDFLAGS:=$(MODLDFLAGS) CPPFLAGS += @OCTAVE_CPPFLAGS@ ifeq ($(cuda),yes) OCTFLAGS=-DASTRA_CUDA else OCTFLAGS= endif endif DEPDIR=.deps BASE_OBJECTS=\ src/Algorithm.lo \ src/AsyncAlgorithm.lo \ src/ReconstructionAlgorithm2D.lo \ src/ReconstructionAlgorithm3D.lo \ src/ArtAlgorithm.lo \ src/AstraObjectFactory.lo \ src/AstraObjectManager.lo \ src/BackProjectionAlgorithm.lo \ src/CglsAlgorithm.lo \ src/CompositeGeometryManager.lo \ src/ConeProjectionGeometry3D.lo \ src/ConeVecProjectionGeometry3D.lo \ src/Config.lo \ src/DataProjector.lo \ src/DataProjectorPolicies.lo \ src/FanFlatBeamLineKernelProjector2D.lo \ src/FanFlatBeamStripKernelProjector2D.lo \ src/FanFlatProjectionGeometry2D.lo \ src/FanFlatVecProjectionGeometry2D.lo \ src/FilteredBackProjectionAlgorithm.lo \ src/Float32Data2D.lo \ src/Float32Data3D.lo \ src/Float32Data3DMemory.lo \ src/Float32Data.lo \ src/Float32ProjectionData2D.lo \ src/Float32ProjectionData3D.lo \ src/Float32ProjectionData3DMemory.lo \ src/Float32VolumeData2D.lo \ src/Float32VolumeData3D.lo \ src/Float32VolumeData3DMemory.lo \ src/ForwardProjectionAlgorithm.lo \ src/Fourier.lo \ src/GeometryUtil3D.lo \ src/Globals.lo \ src/Logging.lo \ src/ParallelBeamBlobKernelProjector2D.lo \ src/ParallelBeamLinearKernelProjector2D.lo \ src/ParallelBeamLineKernelProjector2D.lo \ src/ParallelBeamStripKernelProjector2D.lo \ src/ParallelProjectionGeometry2D.lo \ src/ParallelProjectionGeometry3D.lo \ src/ParallelVecProjectionGeometry3D.lo \ src/PlatformDepSystemCode.lo \ src/PluginAlgorithm.lo \ src/ProjectionGeometry2D.lo \ src/ProjectionGeometry3D.lo \ src/Projector2D.lo \ src/Projector3D.lo \ src/SartAlgorithm.lo \ src/SirtAlgorithm.lo \ src/SparseMatrixProjectionGeometry2D.lo \ src/SparseMatrixProjector2D.lo \ src/SparseMatrix.lo \ src/Utilities.lo \ src/VolumeGeometry2D.lo \ src/VolumeGeometry3D.lo \ src/XMLDocument.lo \ src/XMLNode.lo \ src/swrap.lo CUDA_CXX_OBJECTS=\ src/CudaProjector2D.lo \ src/CudaProjector3D.lo \ src/CudaReconstructionAlgorithm2D.lo \ src/CudaBackProjectionAlgorithm.lo \ src/CudaDartMaskAlgorithm.lo \ src/CudaDartMaskAlgorithm3D.lo \ src/CudaDataOperationAlgorithm.lo \ src/CudaRoiSelectAlgorithm.lo \ src/CudaDartSmoothingAlgorithm.lo \ src/CudaDartSmoothingAlgorithm3D.lo \ src/CudaFilteredBackProjectionAlgorithm.lo \ src/CudaForwardProjectionAlgorithm.lo \ src/CudaSartAlgorithm.lo \ src/CudaSirtAlgorithm.lo \ src/CudaCglsAlgorithm.lo \ src/CudaCglsAlgorithm3D.lo \ src/CudaEMAlgorithm.lo \ src/CudaFDKAlgorithm3D.lo \ src/CudaSirtAlgorithm3D.lo \ src/CudaBackProjectionAlgorithm3D.lo \ src/CudaForwardProjectionAlgorithm3D.lo CUDA_OBJECTS=\ cuda/2d/algo.lo \ cuda/2d/par_fp.lo \ cuda/2d/par_bp.lo \ cuda/2d/fan_fp.lo \ cuda/2d/fan_bp.lo \ cuda/2d/sirt.lo \ cuda/2d/sart.lo \ cuda/2d/cgls.lo \ cuda/2d/em.lo \ cuda/2d/astra.lo \ cuda/2d/util.lo \ cuda/2d/arith.lo \ cuda/2d/fft.lo \ cuda/2d/darthelper.lo \ cuda/3d/darthelper3d.lo \ cuda/3d/algo3d.lo \ cuda/3d/cgls3d.lo \ cuda/3d/cone_fp.lo \ cuda/3d/cone_bp.lo \ cuda/3d/fdk.lo \ cuda/3d/par3d_fp.lo \ cuda/3d/par3d_bp.lo \ cuda/3d/sirt3d.lo \ cuda/3d/astra3d.lo \ cuda/3d/util3d.lo \ cuda/3d/arith3d.lo \ cuda/3d/mem3d.lo ALL_OBJECTS=$(BASE_OBJECTS) ifeq ($(cuda),yes) ALL_OBJECTS+=$(CUDA_CXX_OBJECTS) $(CUDA_OBJECTS) endif TEST_OBJECTS=\ tests/main.o \ tests/test_AstraObjectManager.o \ tests/test_ParallelBeamLineKernelProjector2D.o \ tests/test_ParallelBeamLinearKernelProjector2D.o \ tests/test_Float32Data2D.o \ tests/test_VolumeGeometry2D.o \ tests/test_ParallelProjectionGeometry2D.o \ tests/test_FanFlatProjectionGeometry2D.o \ tests/test_Float32VolumeData2D.o \ tests/test_Float32ProjectionData2D.o \ tests/test_Fourier.o \ tests/test_XMLDocument.o MATLAB_CXX_OBJECTS=\ matlab/mex/mexHelpFunctions.o \ matlab/mex/mexCopyDataHelpFunctions.o \ matlab/mex/mexInitFunctions.o \ matlab/mex/mexDataManagerHelpFunctions.o MATLAB_MEX=\ matlab/mex/astra_mex_algorithm_c.$(MEXSUFFIX) \ matlab/mex/astra_mex_data2d_c.$(MEXSUFFIX) \ matlab/mex/astra_mex_c.$(MEXSUFFIX) \ matlab/mex/astra_mex_matrix_c.$(MEXSUFFIX) \ matlab/mex/astra_mex_projector_c.$(MEXSUFFIX) \ matlab/mex/astra_mex_projector3d_c.$(MEXSUFFIX) \ matlab/mex/astra_mex_log_c.$(MEXSUFFIX) \ matlab/mex/astra_mex_data3d_c.$(MEXSUFFIX) \ matlab/mex/astra_mex_direct_c.$(MEXSUFFIX) OCTAVE_CXX_OBJECTS=\ matlab/mex/octave_support.o OCTAVE_MEX=\ matlab/mex/astra_mex_algorithm_c.mex \ matlab/mex/astra_mex_data2d_c.mex \ matlab/mex/astra_mex_c.mex \ matlab/mex/astra_mex_matrix_c.mex \ matlab/mex/astra_mex_projector_c.mex \ matlab/mex/astra_mex_projector3d_c.mex \ matlab/mex/astra_mex_log_c.mex \ matlab/mex/astra_mex_data3d_c.mex \ matlab/mex/astra_mex_direct_c.mex ifeq 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Python uses CC for compilation even if input is C++. cd $(srcdir)/../../python; ASTRA_INSTALL_LIBRARY_AS_DATA=$(PYPKGDATA) CXX="${CXX}" CC="${CXX}" CPPFLAGS="${PYCPPFLAGS}" LDFLAGS='${PYLDFLAGS}' $(PYTHON) builder.py build --build-base=$(abs_top_builddir)/python/build rm $(srcdir)/../../python/astra/$(SONAME) endif ifeq ($(octave),yes) oct: $(OCTAVE_MEX) %.mex: %.o $(MATLAB_CXX_OBJECTS) $(OCTAVE_CXX_OBJECTS) libastra.la mkoctfile --mex $(OCTFLAGS) $(OCTLDFLAGS) $(LIBS) -lastra --output $* $*.o $(MATLAB_CXX_OBJECTS) $(OCTAVE_CXX_OBJECTS) ifeq ($(python),yes) matlab/mex/astra_mex_plugin_c.mex: matlab/mex/astra_mex_plugin_c.o $(MATLAB_CXX_OBJECTS) $(OCTAVE_CXX_OBJECTS) libastra.la mkoctfile --mex $(OCTFLAGS) $(OCTLDFLAGS) $(LIBS) $(MODPYLIBS) -lastra --output matlab/mex/astra_mex_plugin_c $< $(MATLAB_CXX_OBJECTS) $(OCTAVE_CXX_OBJECTS) endif endif libastra.la: $(ALL_OBJECTS) ./libtool --mode=link --tag=CXX $(LD) -rpath @libdir@ -o $@ $(LDFLAGS) $(LIBS) $+ %.o: %.cpp $(MKDIR) $(*D)/$(DEPDIR) $(CXX) -Wp,-MMD,"$(*D)/$(DEPDIR)/$(*F).d",-MQ,"$@",-MP $(CXXFLAGS) -fPIC -DPIC $(CPPFLAGS) -c $(<) -o $*.o %.lo: %.cpp $(MKDIR) $(*D)/$(DEPDIR) ./libtool --mode=compile --tag=CXX $(CXX) -Wp,-MMD,"$(*D)/$(DEPDIR)/$(*F).d",-MQ,"$@",-MP $(CXXFLAGS) $(CPPFLAGS) -c $(<) -o $*.o gen_static_libs := `./libtool --features | grep -q 'disable static' && echo no || echo yes` ifeq ($(cuda),yes) %.lo: %.cu @# Behave like libtool: compile both a PIC and a non-PIC object file @$(MKDIR) $(*D) @$(MKDIR) $(*D)/.libs @$(MKDIR) $(*D)/$(DEPDIR) $(NVCC) $(NVCCFLAGS) -c $(<) -Xcompiler -fPIC -DPIC -o $(*D)/.libs/$(*F).o ifeq ($(gen_static_libs),yes) @$(NVCC) $(NVCCFLAGS) -c $(<) -o $*.o >/dev/null 2>&1 endif @# Generate a .d file, and change the target name in it from .o to .lo @# CUDA 5.5's nvcc doesn't have the -MT option we would like to use. @$(NVCC) $(NVCCFLAGS) -M $(<) -odir $(*D) -o $(*D)/$(DEPDIR)/$(*F).d2 @sed '1s/\.o :/.lo :/' < $(*D)/$(DEPDIR)/$(*F).d2 > $(*D)/$(DEPDIR)/$(*F).d @rm -f $(*D)/$(DEPDIR)/$(*F).d2 @# Generate empty targets for all dependencies listed in the .d file. @# This mimics gcc's -MP option. @for x in `cat $(*D)/$(DEPDIR)/$(*F).d`; 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Python uses CC for compilation even if input is C++. cd $(srcdir)/../../python; ASTRA_INSTALL_LIBRARY_AS_DATA=$(PYPKGDATA) CXX="${CXX}" CC="${CXX}" CPPFLAGS="${PYCPPFLAGS}" LDFLAGS="${PYLDFLAGS}" $(PYTHON) builder.py build --build-base=$(abs_top_builddir)/python/build install \ --install-base=$(abs_top_builddir)/python/finalbuild --install-headers=$(abs_top_builddir)/python/finalbuild --install-purelib=$(abs_top_builddir)/python/finalbuild \ --install-platlib=$(abs_top_builddir)/python/finalbuild --install-scripts=$(abs_top_builddir)/python/finalbuild --install-data=$(abs_top_builddir)/python/finalbuild $(INSTALL_SH) -m 755 -d @prefix@/python $(INSTALL_SH) -m 755 -d @prefix@/python/astra $(INSTALL_SH) -m 755 -d @prefix@/python/astra/plugins $(INSTALL_SH) -m 755 python/finalbuild/astra/*.so @prefix@/python/astra $(INSTALL_SH) -m 644 python/finalbuild/astra/*.py @prefix@/python/astra $(INSTALL_SH) -m 644 python/finalbuild/astra/plugins/*.py @prefix@/python/astra/plugins $(INSTALL_SH) -m 644 python/finalbuild/*.egg-info @prefix@/python/ # TODO: docs install-python-site-packages: py # Note: setting CC to CXX is intentional. Python uses CC for compilation even if input is C++. cd $(srcdir)/../../python; ASTRA_INSTALL_LIBRARY_AS_DATA=$(PYPKGDATA) CXX="${CXX}" CC="${CXX}" CPPFLAGS="${PYCPPFLAGS}" LDFLAGS="${PYLDFLAGS}" $(PYTHON) builder.py build --build-base=$(abs_top_builddir)/python/build install else install-python-site-packages: install-python: endif ifeq ($(matlab),yes) install-matlab: $(MATLAB_MEX) install-matlab-so $(INSTALL_SH) -m 755 -d $(MATLABBASE) $(INSTALL_SH) -m 755 -d $(MATLABBASE)/mex $(INSTALL_SH) -m 755 -d $(MATLABBASE)/tools $(INSTALL_SH) -m 755 $(MATLAB_MEX) $(MATLABBASE)/mex $(INSTALL_SH) -m 644 $(srcdir)/../../matlab/tools/*.m $(MATLABBASE)/tools # TODO: docs else install-matlab: endif ifeq ($(octave),yes) install-octave: $(OCTAVE_MEX) install-octave-so $(INSTALL_SH) -m 755 -d $(OCTAVEBASE) $(INSTALL_SH) -m 755 -d $(OCTAVEBASE)/mex $(INSTALL_SH) -m 755 -d $(OCTAVEBASE)/tools $(INSTALL_SH) -m 755 $(OCTAVE_MEX) $(OCTAVEBASE)/mex $(INSTALL_SH) -m 644 $(srcdir)/../../matlab/tools/*.m $(OCTAVEBASE)/tools # TODO: docs else install-octave: endif Makefile: $(srcdir)/Makefile.in config.status CONFIG_HEADERS= CONFIG_LINKS= CONFIG_FILES=$@ $(SHELL) ./config.status config.status: $(srcdir)/configure @echo "configure script has changed. Re-running it with last parameters" $(SHELL) ./config.status --recheck $(srcdir)/configure: $(srcdir)/configure.ac @echo "configure.ac has been changed. Regenerating configure script" cd $(srcdir) && $(SHELL) ./autogen.sh .PHONY: all mex test clean distclean install install-libraries py install-python-site-packages install-python install-octave install-matlab-so install-octave-so # don't remove intermediate files: .SECONDARY: # disable all implicit built-in rules .SUFFIXES: