/* ----------------------------------------------------------------------- Copyright: 2010-2018, iMinds-Vision Lab, University of Antwerp 2014-2018, CWI, Amsterdam Contact: astra@astra-toolbox.com Website: http://www.astra-toolbox.com/ This file is part of the ASTRA Toolbox. The ASTRA Toolbox is free software: you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version. The ASTRA Toolbox is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details. You should have received a copy of the GNU General Public License along with the ASTRA Toolbox. If not, see . ----------------------------------------------------------------------- */ #include #include #include "util.h" #include "par_fp.h" #include "fan_fp.h" #include "par_bp.h" #include "fan_bp.h" #include "arith.h" #include "astra.h" #include "fft.h" #include #include #include "../../include/astra/GeometryUtil2D.h" #include "../../include/astra/VolumeGeometry2D.h" #include "../../include/astra/ParallelProjectionGeometry2D.h" #include "../../include/astra/ParallelVecProjectionGeometry2D.h" #include "../../include/astra/FanFlatProjectionGeometry2D.h" #include "../../include/astra/FanFlatVecProjectionGeometry2D.h" #include "../../include/astra/Logging.h" // For fan beam FBP weighting #include "../3d/fdk.h" using namespace astraCUDA; using namespace std; namespace astra { enum CUDAProjectionType { PROJ_PARALLEL, PROJ_FAN }; BPalgo::BPalgo() { } BPalgo::~BPalgo() { } bool BPalgo::init() { return true; } bool BPalgo::iterate(unsigned int) { // TODO: This zeroVolume makes an earlier memcpy of D_volumeData redundant zeroVolumeData(D_volumeData, volumePitch, dims); callBP(D_volumeData, volumePitch, D_sinoData, sinoPitch, 1.0f); return true; } float BPalgo::computeDiffNorm() { float *D_projData; unsigned int projPitch; allocateProjectionData(D_projData, projPitch, dims); duplicateProjectionData(D_projData, D_sinoData, sinoPitch, dims); callFP(D_volumeData, volumePitch, D_projData, projPitch, -1.0f); float s = dotProduct2D(D_projData, projPitch, dims.iProjDets, dims.iProjAngles); cudaFree(D_projData); return sqrt(s); } bool astraCudaFP(const float* pfVolume, float* pfSinogram, unsigned int iVolWidth, unsigned int iVolHeight, unsigned int iProjAngles, unsigned int iProjDets, const SParProjection *pAngles, unsigned int iDetSuperSampling, float fOutputScale, int iGPUIndex) { SDimensions dims; if (iProjAngles == 0 || iProjDets == 0 || pAngles == 0) return false; dims.iProjAngles = iProjAngles; dims.iProjDets = iProjDets; if (iDetSuperSampling == 0) return false; dims.iRaysPerDet = iDetSuperSampling; if (iVolWidth <= 0 || iVolHeight <= 0) return false; dims.iVolWidth = iVolWidth; dims.iVolHeight = iVolHeight; if (iGPUIndex != -1) { cudaSetDevice(iGPUIndex); cudaError_t err = cudaGetLastError(); // Ignore errors caused by calling cudaSetDevice multiple times if (err != cudaSuccess && err != cudaErrorSetOnActiveProcess) return false; } bool ok; float* D_volumeData; unsigned int volumePitch; ok = allocateVolumeData(D_volumeData, volumePitch, dims); if (!ok) return false; float* D_sinoData; unsigned int sinoPitch; ok = allocateProjectionData(D_sinoData, sinoPitch, dims); if (!ok) { cudaFree(D_volumeData); return false; } ok = copyVolumeToDevice(pfVolume, dims.iVolWidth, dims, D_volumeData, volumePitch); if (!ok) { cudaFree(D_volumeData); cudaFree(D_sinoData); return false; } zeroProjectionData(D_sinoData, sinoPitch, dims); ok = FP(D_volumeData, volumePitch, D_sinoData, sinoPitch, dims, pAngles, fOutputScale); if (!ok) { cudaFree(D_volumeData); cudaFree(D_sinoData); return false; } ok = copySinogramFromDevice(pfSinogram, dims.iProjDets, dims, D_sinoData, sinoPitch); if (!ok) { cudaFree(D_volumeData); cudaFree(D_sinoData); return false; } cudaFree(D_volumeData); cudaFree(D_sinoData); return true; } bool astraCudaFanFP(const float* pfVolume, float* pfSinogram, unsigned int iVolWidth, unsigned int iVolHeight, unsigned int iProjAngles, unsigned int iProjDets, const SFanProjection *pAngles, unsigned int iDetSuperSampling, float fOutputScale, int iGPUIndex) { SDimensions dims; if (iProjAngles == 0 || iProjDets == 0 || pAngles == 0) return false; dims.iProjAngles = iProjAngles; dims.iProjDets = iProjDets; if (iDetSuperSampling == 0) return false; dims.iRaysPerDet = iDetSuperSampling; if (iVolWidth <= 0 || iVolHeight <= 0) return false; dims.iVolWidth = iVolWidth; dims.iVolHeight = iVolHeight; if (iGPUIndex != -1) { cudaSetDevice(iGPUIndex); cudaError_t err = cudaGetLastError(); // Ignore errors caused by calling cudaSetDevice multiple times if (err != cudaSuccess && err != cudaErrorSetOnActiveProcess) return false; } bool ok; float* D_volumeData; unsigned int volumePitch; ok = allocateVolumeData(D_volumeData, volumePitch, dims); if (!ok) return false; float* D_sinoData; unsigned int sinoPitch; ok = allocateProjectionData(D_sinoData, sinoPitch, dims); if (!ok) { cudaFree(D_volumeData); return false; } ok = copyVolumeToDevice(pfVolume, dims.iVolWidth, dims, D_volumeData, volumePitch); if (!ok) { cudaFree(D_volumeData); cudaFree(D_sinoData); return false; } zeroProjectionData(D_sinoData, sinoPitch, dims); ok = FanFP(D_volumeData, volumePitch, D_sinoData, sinoPitch, dims, pAngles, fOutputScale); if (!ok) { cudaFree(D_volumeData); cudaFree(D_sinoData); return false; } ok = copySinogramFromDevice(pfSinogram, dims.iProjDets, dims, D_sinoData, sinoPitch); if (!ok) { cudaFree(D_volumeData); cudaFree(D_sinoData); return false; } cudaFree(D_volumeData); cudaFree(D_sinoData); return true; } // adjust pProjs to normalize volume geometry template static bool convertAstraGeometry_internal(const CVolumeGeometry2D* pVolGeom, unsigned int iProjectionAngleCount, ProjectionT*& pProjs, float& fOutputScale) { // TODO: Make EPS relative const float EPS = 0.00001f; // Check if pixels are square if (abs(pVolGeom->getPixelLengthX() - pVolGeom->getPixelLengthY()) > EPS) return false; float dx = -(pVolGeom->getWindowMinX() + pVolGeom->getWindowMaxX()) / 2; float dy = -(pVolGeom->getWindowMinY() + pVolGeom->getWindowMaxY()) / 2; float factor = 1.0f / pVolGeom->getPixelLengthX(); for (int i = 0; i < iProjectionAngleCount; ++i) { // CHECKME: Order of scaling and translation pProjs[i].translate(dx, dy); pProjs[i].scale(factor); } // CHECKME: Check factor fOutputScale *= pVolGeom->getPixelLengthX() * pVolGeom->getPixelLengthY(); return true; } bool convertAstraGeometry(const CVolumeGeometry2D* pVolGeom, const CParallelProjectionGeometry2D* pProjGeom, SParProjection*& pProjs, float& fOutputScale) { assert(pVolGeom); assert(pProjGeom); assert(pProjGeom->getProjectionAngles()); int nth = pProjGeom->getProjectionAngleCount(); pProjs = genParProjections(nth, pProjGeom->getDetectorCount(), pProjGeom->getDetectorWidth(), pProjGeom->getProjectionAngles(), 0); bool ok; fOutputScale = 1.0f; ok = convertAstraGeometry_internal(pVolGeom, nth, pProjs, fOutputScale); if (!ok) { delete[] pProjs; pProjs = 0; } return ok; } bool convertAstraGeometry(const CVolumeGeometry2D* pVolGeom, const CParallelVecProjectionGeometry2D* pProjGeom, SParProjection*& pProjs, float& fOutputScale) { assert(pVolGeom); assert(pProjGeom); assert(pProjGeom->getProjectionVectors()); int nth = pProjGeom->getProjectionAngleCount(); pProjs = new SParProjection[nth]; for (int i = 0; i < nth; ++i) { pProjs[i] = pProjGeom->getProjectionVectors()[i]; } bool ok; fOutputScale = 1.0f; ok = convertAstraGeometry_internal(pVolGeom, nth, pProjs, fOutputScale); if (!ok) { delete[] pProjs; pProjs = 0; } return ok; } bool convertAstraGeometry(const CVolumeGeometry2D* pVolGeom, const CFanFlatProjectionGeometry2D* pProjGeom, astraCUDA::SFanProjection*& pProjs, float& outputScale) { assert(pVolGeom); assert(pProjGeom); assert(pProjGeom->getProjectionAngles()); // TODO: Make EPS relative const float EPS = 0.00001f; int nth = pProjGeom->getProjectionAngleCount(); // Check if pixels are square if (abs(pVolGeom->getPixelLengthX() - pVolGeom->getPixelLengthY()) > EPS) return false; // TODO: Deprecate this. // if (pProjGeom->getExtraDetectorOffset()) // return false; float fOriginSourceDistance = pProjGeom->getOriginSourceDistance(); float fOriginDetectorDistance = pProjGeom->getOriginDetectorDistance(); float fDetSize = pProjGeom->getDetectorWidth(); const float *pfAngles = pProjGeom->getProjectionAngles(); pProjs = genFanProjections(nth, pProjGeom->getDetectorCount(), fOriginSourceDistance, fOriginDetectorDistance, fDetSize, pfAngles); convertAstraGeometry_internal(pVolGeom, nth, pProjs, outputScale); return true; } bool convertAstraGeometry(const CVolumeGeometry2D* pVolGeom, const CFanFlatVecProjectionGeometry2D* pProjGeom, astraCUDA::SFanProjection*& pProjs, float& outputScale) { assert(pVolGeom); assert(pProjGeom); assert(pProjGeom->getProjectionVectors()); // TODO: Make EPS relative const float EPS = 0.00001f; int nx = pVolGeom->getGridColCount(); int ny = pVolGeom->getGridRowCount(); int nth = pProjGeom->getProjectionAngleCount(); // Check if pixels are square if (abs(pVolGeom->getPixelLengthX() - pVolGeom->getPixelLengthY()) > EPS) return false; pProjs = new SFanProjection[nth]; // Copy vectors for (int i = 0; i < nth; ++i) pProjs[i] = pProjGeom->getProjectionVectors()[i]; convertAstraGeometry_internal(pVolGeom, nth, pProjs, outputScale); return true; } bool convertAstraGeometry(const CVolumeGeometry2D* pVolGeom, const CProjectionGeometry2D* pProjGeom, astraCUDA::SParProjection*& pParProjs, astraCUDA::SFanProjection*& pFanProjs, float& outputScale) { const CParallelProjectionGeometry2D* parProjGeom = dynamic_cast(pProjGeom); const CParallelVecProjectionGeometry2D* parVecProjGeom = dynamic_cast(pProjGeom); const CFanFlatProjectionGeometry2D* fanProjGeom = dynamic_cast(pProjGeom); const CFanFlatVecProjectionGeometry2D* fanVecProjGeom = dynamic_cast(pProjGeom); bool ok = false; if (parProjGeom) { ok = convertAstraGeometry(pVolGeom, parProjGeom, pParProjs, outputScale); } else if (parVecProjGeom) { ok = convertAstraGeometry(pVolGeom, parVecProjGeom, pParProjs, outputScale); } else if (fanProjGeom) { ok = convertAstraGeometry(pVolGeom, fanProjGeom, pFanProjs, outputScale); } else if (fanVecProjGeom) { ok = convertAstraGeometry(pVolGeom, fanVecProjGeom, pFanProjs, outputScale); } else { ok = false; } return ok; } bool convertAstraGeometry_dims(const CVolumeGeometry2D* pVolGeom, const CProjectionGeometry2D* pProjGeom, SDimensions& dims) { dims.iVolWidth = pVolGeom->getGridColCount(); dims.iVolHeight = pVolGeom->getGridRowCount(); dims.iProjAngles = pProjGeom->getProjectionAngleCount(); dims.iProjDets = pProjGeom->getDetectorCount(); dims.iRaysPerDet = 1; dims.iRaysPerPixelDim = 1; return true; } } namespace astraCUDA { _AstraExport std::string getCudaDeviceString(int device) { char buf[1024]; cudaError_t err; if (device == -1) { err = cudaGetDevice(&device); if (err != cudaSuccess) { return "Error getting current GPU index"; } } cudaDeviceProp prop; err = cudaGetDeviceProperties(&prop, device); if (err != cudaSuccess) { snprintf(buf, 1024, "GPU #%d: Invalid device (%d): %s", device, err, cudaGetErrorString(err)); return buf; } long mem = prop.totalGlobalMem / (1024*1024); snprintf(buf, 1024, "GPU #%d: %s, with %ldMB", device, prop.name, mem); return buf; } _AstraExport bool setGPUIndex(int iGPUIndex) { if (iGPUIndex != -1) { cudaSetDevice(iGPUIndex); cudaError_t err = cudaGetLastError(); // Ignore errors caused by calling cudaSetDevice multiple times if (err != cudaSuccess && err != cudaErrorSetOnActiveProcess) return false; } return true; } _AstraExport size_t availableGPUMemory() { size_t free, total; cudaError_t err = cudaMemGetInfo(&free, &total); if (err != cudaSuccess) return 0; return free; } }