/*
-----------------------------------------------------------------------
Copyright: 2010-2016, iMinds-Vision Lab, University of Antwerp
2014-2016, CWI, Amsterdam
Contact: astra@uantwerpen.be
Website: http://www.astra-toolbox.com/
This file is part of the ASTRA Toolbox.
The ASTRA Toolbox is free software: you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation, either version 3 of the License, or
(at your option) any later version.
The ASTRA Toolbox is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
You should have received a copy of the GNU General Public License
along with the ASTRA Toolbox. If not, see .
-----------------------------------------------------------------------
*/
#include
#include
#include "sart.h"
#include "util.h"
#include "arith.h"
#include "fan_fp.h"
#include "fan_bp.h"
#include "par_fp.h"
#include "par_bp.h"
namespace astraCUDA {
// FIXME: Remove these functions. (Outdated)
__global__ void devMUL_SART(float* pfOut, const float* pfIn, unsigned int pitch, unsigned int width)
{
unsigned int x = threadIdx.x + 16*blockIdx.x;
if (x >= width) return;
pfOut[x] *= pfIn[x];
}
void MUL_SART(float* pfOut, const float* pfIn, unsigned int pitch, unsigned int width)
{
dim3 blockSize(16,16);
dim3 gridSize((width+15)/16, 1);
devMUL_SART<<>>(pfOut, pfIn, pitch, width);
cudaTextForceKernelsCompletion();
}
SART::SART() : ReconAlgo()
{
D_projData = 0;
D_tmpData = 0;
D_lineWeight = 0;
projectionOrder = 0;
projectionCount = 0;
iteration = 0;
customOrder = false;
fRelaxation = 1.0f;
}
SART::~SART()
{
reset();
}
void SART::reset()
{
cudaFree(D_projData);
cudaFree(D_tmpData);
cudaFree(D_lineWeight);
D_projData = 0;
D_tmpData = 0;
D_lineWeight = 0;
useVolumeMask = false;
useSinogramMask = false;
if (projectionOrder != NULL) delete[] projectionOrder;
projectionOrder = 0;
projectionCount = 0;
iteration = 0;
customOrder = false;
fRelaxation = 1.0f;
ReconAlgo::reset();
}
bool SART::init()
{
if (useVolumeMask) {
allocateVolumeData(D_tmpData, tmpPitch, dims);
zeroVolumeData(D_tmpData, tmpPitch, dims);
}
// NB: Non-standard dimensions
SDimensions linedims = dims;
linedims.iProjAngles = 1;
allocateProjectionData(D_projData, projPitch, linedims);
zeroProjectionData(D_projData, projPitch, linedims);
allocateProjectionData(D_lineWeight, linePitch, dims);
zeroProjectionData(D_lineWeight, linePitch, dims);
// We can't precompute lineWeights when using a mask
if (!useVolumeMask)
precomputeWeights();
// TODO: check if allocations succeeded
return true;
}
bool SART::setProjectionOrder(int* _projectionOrder, int _projectionCount)
{
customOrder = true;
projectionCount = _projectionCount;
projectionOrder = new int[projectionCount];
for (int i = 0; i < projectionCount; i++) {
projectionOrder[i] = _projectionOrder[i];
}
return true;
}
bool SART::precomputeWeights()
{
zeroProjectionData(D_lineWeight, linePitch, dims);
if (useVolumeMask) {
callFP(D_maskData, maskPitch, D_lineWeight, linePitch, 1.0f);
} else {
// Allocate tmpData temporarily
allocateVolumeData(D_tmpData, tmpPitch, dims);
zeroVolumeData(D_tmpData, tmpPitch, dims);
processVol(D_tmpData, 1.0f, tmpPitch, dims);
callFP(D_tmpData, tmpPitch, D_lineWeight, linePitch, 1.0f);
cudaFree(D_tmpData);
D_tmpData = 0;
}
processSino(D_lineWeight, linePitch, dims);
return true;
}
bool SART::iterate(unsigned int iterations)
{
shouldAbort = false;
if (useVolumeMask)
precomputeWeights();
// iteration
for (unsigned int iter = 0; iter < iterations && !shouldAbort; ++iter) {
int angle;
if (customOrder) {
angle = projectionOrder[iteration % projectionCount];
} else {
angle = iteration % dims.iProjAngles;
}
// copy one line of sinogram to projection data
// NB: Non-standard dimensions
SDimensions linedims = dims;
linedims.iProjAngles = 1;
duplicateProjectionData(D_projData, D_sinoData + angle*sinoPitch, sinoPitch, linedims);
// do FP, subtracting projection from sinogram
if (useVolumeMask) {
duplicateVolumeData(D_tmpData, D_volumeData, volumePitch, dims);
processVol(D_tmpData, D_maskData, tmpPitch, dims);
callFP_SART(D_tmpData, tmpPitch, D_projData, projPitch, angle, -1.0f);
} else {
callFP_SART(D_volumeData, volumePitch, D_projData, projPitch, angle, -1.0f);
}
MUL_SART(D_projData, D_lineWeight + angle*linePitch, projPitch, dims.iProjDets);
if (useVolumeMask) {
// BP, mask, and add back
// TODO: Try putting the masking directly in the BP
zeroVolumeData(D_tmpData, tmpPitch, dims);
callBP_SART(D_tmpData, tmpPitch, D_projData, projPitch, angle, fRelaxation);
processVol(D_volumeData, D_maskData, D_tmpData, volumePitch, dims);
} else {
callBP_SART(D_volumeData, volumePitch, D_projData, projPitch, angle, fRelaxation);
}
if (useMinConstraint)
processVol(D_volumeData, fMinConstraint, volumePitch, dims);
if (useMaxConstraint)
processVol(D_volumeData, fMaxConstraint, volumePitch, dims);
iteration++;
}
return true;
}
float SART::computeDiffNorm()
{
unsigned int pPitch;
float *D_p;
allocateProjectionData(D_p, pPitch, dims);
// copy sinogram to D_p
duplicateProjectionData(D_p, D_sinoData, sinoPitch, dims);
// do FP, subtracting projection from sinogram
if (useVolumeMask) {
duplicateVolumeData(D_tmpData, D_volumeData, volumePitch, dims);
processVol(D_tmpData, D_maskData, tmpPitch, dims);
callFP(D_tmpData, tmpPitch, D_p, pPitch, -1.0f);
} else {
callFP(D_volumeData, volumePitch, D_p, pPitch, -1.0f);
}
// compute norm of D_p
float s = dotProduct2D(D_p, pPitch, dims.iProjDets, dims.iProjAngles);
cudaFree(D_p);
return sqrt(s);
}
bool SART::callFP_SART(float* D_volumeData, unsigned int volumePitch,
float* D_projData, unsigned int projPitch,
unsigned int angle, float outputScale)
{
SDimensions d = dims;
d.iProjAngles = 1;
if (angles) {
assert(!fanProjs);
return FP(D_volumeData, volumePitch, D_projData, projPitch,
d, &angles[angle], TOffsets, outputScale);
} else {
assert(fanProjs);
return FanFP(D_volumeData, volumePitch, D_projData, projPitch,
d, &fanProjs[angle], outputScale);
}
}
bool SART::callBP_SART(float* D_volumeData, unsigned int volumePitch,
float* D_projData, unsigned int projPitch,
unsigned int angle, float outputScale)
{
if (angles) {
assert(!fanProjs);
return BP_SART(D_volumeData, volumePitch, D_projData, projPitch,
angle, dims, angles, TOffsets, outputScale);
} else {
assert(fanProjs);
return FanBP_SART(D_volumeData, volumePitch, D_projData, projPitch,
angle, dims, fanProjs, outputScale);
}
}
}