/* ----------------------------------------------------------------------- Copyright 2012 iMinds-Vision Lab, University of Antwerp Contact: astra@ua.ac.be Website: http://astra.ua.ac.be This file is part of the All Scale Tomographic Reconstruction Antwerp Toolbox ("ASTRA Toolbox"). The ASTRA Toolbox is free software: you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version. The ASTRA Toolbox is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details. You should have received a copy of the GNU General Public License along with the ASTRA Toolbox. If not, see . ----------------------------------------------------------------------- $Id$ */ #ifdef ASTRA_CUDA #include "astra/CudaDartMaskAlgorithm3D.h" #include "../cuda/3d/darthelper3d.h" #include "../cuda/3d/dims3d.h" #include "astra/AstraObjectManager.h" #include using namespace std; namespace astra { // type of the algorithm, needed to register with CAlgorithmFactory std::string CCudaDartMaskAlgorithm3D::type = "DARTMASK3D_CUDA"; //---------------------------------------------------------------------------------------- // Constructor CCudaDartMaskAlgorithm3D::CCudaDartMaskAlgorithm3D() { m_bIsInitialized = false; } //---------------------------------------------------------------------------------------- // Destructor CCudaDartMaskAlgorithm3D::~CCudaDartMaskAlgorithm3D() { } //--------------------------------------------------------------------------------------- // Initialize - Config bool CCudaDartMaskAlgorithm3D::initialize(const Config& _cfg) { ASTRA_ASSERT(_cfg.self); ConfigStackCheck CC("CudaDartMaskAlgorithm", this, _cfg); // reconstruction data XMLNode* node = _cfg.self->getSingleNode("SegmentationDataId"); ASTRA_CONFIG_CHECK(node, "CudaDartMask", "No SegmentationDataId tag specified."); int id = boost::lexical_cast(node->getContent()); m_pSegmentation = dynamic_cast(CData3DManager::getSingleton().get(id)); ASTRA_DELETE(node); CC.markNodeParsed("SegmentationDataId"); // reconstruction data node = _cfg.self->getSingleNode("MaskDataId"); ASTRA_CONFIG_CHECK(node, "CudaDartMask", "No MaskDataId tag specified."); id = boost::lexical_cast(node->getContent()); m_pMask = dynamic_cast(CData3DManager::getSingleton().get(id)); ASTRA_DELETE(node); CC.markNodeParsed("MaskDataId"); // Option: GPU number m_iGPUIndex = (int)_cfg.self->getOptionNumerical("GPUindex", 0); m_iGPUIndex = (int)_cfg.self->getOptionNumerical("GPUIndex", m_iGPUIndex); CC.markOptionParsed("GPUindex"); if (!_cfg.self->hasOption("GPUindex")) CC.markOptionParsed("GPUIndex"); // Option: Connectivity m_iConn = (unsigned int)_cfg.self->getOptionNumerical("Connectivity", 8); CC.markOptionParsed("Connectivity"); // Option: Threshold m_iThreshold = (unsigned int)_cfg.self->getOptionNumerical("Threshold", 1); CC.markOptionParsed("Threshold"); // Option: Radius m_iRadius = (unsigned int)_cfg.self->getOptionNumerical("Radius", 1); CC.markOptionParsed("Radius"); _check(); if (!m_bIsInitialized) return false; return true; } //--------------------------------------------------------------------------------------- // Initialize - C++ //bool CCudaDartMaskAlgorithm3D::initialize(CFloat32VolumeData2D* _pSegmentation, int _iConn) //{ // return false; //} //---------------------------------------------------------------------------------------- // Iterate void CCudaDartMaskAlgorithm3D::run(int _iNrIterations) { // check initialized ASTRA_ASSERT(m_bIsInitialized); const CVolumeGeometry3D& volgeom = *m_pSegmentation->getGeometry(); astraCUDA3d::SDimensions3D dims; dims.iVolX = volgeom.getGridColCount(); dims.iVolY = volgeom.getGridRowCount(); dims.iVolZ = volgeom.getGridSliceCount(); astraCUDA3d::setGPUIndex(m_iGPUIndex); astraCUDA3d::dartMasking(m_pMask->getData(), m_pSegmentation->getDataConst(), m_iConn, m_iRadius, m_iThreshold, dims); } //---------------------------------------------------------------------------------------- // Check bool CCudaDartMaskAlgorithm3D::_check() { // connectivity: 4 of 8 // gpuindex >= 0 // success m_bIsInitialized = true; return true; } //--------------------------------------------------------------------------------------- // Information - All map CCudaDartMaskAlgorithm3D::getInformation() { map res; // TODO: add PDART-specific options return mergeMap(CAlgorithm::getInformation(), res); } //--------------------------------------------------------------------------------------- // Information - Specific boost::any CCudaDartMaskAlgorithm3D::getInformation(std::string _sIdentifier) { return NULL; } } // namespace astra #endif // ASTRA_CUDA