1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
|
/*
-----------------------------------------------------------------------
Copyright: 2010-2015, iMinds-Vision Lab, University of Antwerp
2014-2015, CWI, Amsterdam
Contact: astra@uantwerpen.be
Website: http://sf.net/projects/astra-toolbox
This file is part of the ASTRA Toolbox.
The ASTRA Toolbox is free software: you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation, either version 3 of the License, or
(at your option) any later version.
The ASTRA Toolbox is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
You should have received a copy of the GNU General Public License
along with the ASTRA Toolbox. If not, see <http://www.gnu.org/licenses/>.
-----------------------------------------------------------------------
$Id$
*/
#include <cstdio>
#include <cassert>
#include "util3d.h"
#include "mem3d.h"
#include "astra3d.h"
#include "cone_fp.h"
#include "cone_bp.h"
#include "par3d_fp.h"
#include "par3d_bp.h"
#include "astra/Logging.h"
namespace astraCUDA3d {
struct SMemHandle3D_internal
{
cudaPitchedPtr ptr;
unsigned int nx;
unsigned int ny;
unsigned int nz;
};
size_t availableGPUMemory()
{
size_t free, total;
cudaError_t err = cudaMemGetInfo(&free, &total);
if (err != cudaSuccess)
return 0;
return free;
}
MemHandle3D allocateGPUMemory(unsigned int x, unsigned int y, unsigned int z, Mem3DZeroMode zero)
{
SMemHandle3D_internal hnd;
hnd.nx = x;
hnd.ny = y;
hnd.nz = z;
size_t free = availableGPUMemory();
cudaError_t err;
err = cudaMalloc3D(&hnd.ptr, make_cudaExtent(sizeof(float)*x, y, z));
if (err != cudaSuccess) {
return MemHandle3D();
}
size_t free2 = availableGPUMemory();
ASTRA_DEBUG("Allocated %d x %d x %d on GPU. (Pre: %lu, post: %lu)", x, y, z, free, free2);
if (zero == INIT_ZERO) {
err = cudaMemset3D(hnd.ptr, 0, make_cudaExtent(sizeof(float)*x, y, z));
if (err != cudaSuccess) {
cudaFree(hnd.ptr.ptr);
return MemHandle3D();
}
}
MemHandle3D ret;
ret.d = boost::shared_ptr<SMemHandle3D_internal>(new SMemHandle3D_internal);
*ret.d = hnd;
return ret;
}
bool freeGPUMemory(MemHandle3D handle)
{
size_t free = availableGPUMemory();
cudaError_t err = cudaFree(handle.d->ptr.ptr);
size_t free2 = availableGPUMemory();
ASTRA_DEBUG("Freeing memory. (Pre: %lu, post: %lu)", free, free2);
return err == cudaSuccess;
}
bool copyToGPUMemory(const float *src, MemHandle3D dst, const SSubDimensions3D &pos)
{
ASTRA_DEBUG("Copying %d x %d x %d to GPU", pos.subnx, pos.subny, pos.subnz);
ASTRA_DEBUG("Offset %d,%d,%d", pos.subx, pos.suby, pos.subz);
cudaPitchedPtr s;
s.ptr = (void*)src; // const cast away
s.pitch = pos.pitch * sizeof(float);
s.xsize = pos.nx * sizeof(float);
s.ysize = pos.ny;
ASTRA_DEBUG("Pitch %d, xsize %d, ysize %d", s.pitch, s.xsize, s.ysize);
cudaMemcpy3DParms p;
p.srcArray = 0;
p.srcPos = make_cudaPos(pos.subx * sizeof(float), pos.suby, pos.subz);
p.srcPtr = s;
p.dstArray = 0;
p.dstPos = make_cudaPos(0, 0, 0);
p.dstPtr = dst.d->ptr;
p.extent = make_cudaExtent(pos.subnx * sizeof(float), pos.subny, pos.subnz);
p.kind = cudaMemcpyHostToDevice;
cudaError_t err = cudaMemcpy3D(&p);
return err == cudaSuccess;
}
bool copyFromGPUMemory(float *dst, MemHandle3D src, const SSubDimensions3D &pos)
{
ASTRA_DEBUG("Copying %d x %d x %d from GPU", pos.subnx, pos.subny, pos.subnz);
ASTRA_DEBUG("Offset %d,%d,%d", pos.subx, pos.suby, pos.subz);
cudaPitchedPtr d;
d.ptr = (void*)dst;
d.pitch = pos.pitch * sizeof(float);
d.xsize = pos.nx * sizeof(float);
d.ysize = pos.ny;
ASTRA_DEBUG("Pitch %d, xsize %d, ysize %d", d.pitch, d.xsize, d.ysize);
cudaMemcpy3DParms p;
p.srcArray = 0;
p.srcPos = make_cudaPos(0, 0, 0);
p.srcPtr = src.d->ptr;
p.dstArray = 0;
p.dstPos = make_cudaPos(pos.subx * sizeof(float), pos.suby, pos.subz);
p.dstPtr = d;
p.extent = make_cudaExtent(pos.subnx * sizeof(float), pos.subny, pos.subnz);
p.kind = cudaMemcpyDeviceToHost;
cudaError_t err = cudaMemcpy3D(&p);
return err == cudaSuccess;
}
bool FP(const astra::CProjectionGeometry3D* pProjGeom, MemHandle3D projData, const astra::CVolumeGeometry3D* pVolGeom, MemHandle3D volData, int iDetectorSuperSampling, astra::Cuda3DProjectionKernel projKernel)
{
SDimensions3D dims;
bool ok = convertAstraGeometry_dims(pVolGeom, pProjGeom, dims);
if (!ok)
return false;
#if 1
dims.iRaysPerDetDim = iDetectorSuperSampling;
if (iDetectorSuperSampling == 0)
return false;
#else
dims.iRaysPerDetDim = 1;
astra::Cuda3DProjectionKernel projKernel = astra::ker3d_default;
#endif
SPar3DProjection* pParProjs;
SConeProjection* pConeProjs;
float outputScale = 1.0f;
ok = convertAstraGeometry(pVolGeom, pProjGeom,
pParProjs, pConeProjs,
outputScale);
if (pParProjs) {
#if 0
for (int i = 0; i < dims.iProjAngles; ++i) {
ASTRA_DEBUG("Vec: %6.3f %6.3f %6.3f %6.3f %6.3f %6.3f %6.3f %6.3f %6.3f %6.3f %6.3f %6.3f\n",
pParProjs[i].fRayX, pParProjs[i].fRayY, pParProjs[i].fRayZ,
pParProjs[i].fDetSX, pParProjs[i].fDetSY, pParProjs[i].fDetSZ,
pParProjs[i].fDetUX, pParProjs[i].fDetUY, pParProjs[i].fDetUZ,
pParProjs[i].fDetVX, pParProjs[i].fDetVY, pParProjs[i].fDetVZ);
}
#endif
switch (projKernel) {
case astra::ker3d_default:
ok &= Par3DFP(volData.d->ptr, projData.d->ptr, dims, pParProjs, outputScale);
break;
case astra::ker3d_sum_square_weights:
ok &= Par3DFP_SumSqW(volData.d->ptr, projData.d->ptr, dims, pParProjs, outputScale*outputScale);
break;
default:
ok = false;
}
} else {
switch (projKernel) {
case astra::ker3d_default:
ok &= ConeFP(volData.d->ptr, projData.d->ptr, dims, pConeProjs, outputScale);
break;
default:
ok = false;
}
}
return ok;
}
bool BP(const astra::CProjectionGeometry3D* pProjGeom, MemHandle3D projData, const astra::CVolumeGeometry3D* pVolGeom, MemHandle3D volData, int iVoxelSuperSampling)
{
SDimensions3D dims;
bool ok = convertAstraGeometry_dims(pVolGeom, pProjGeom, dims);
if (!ok)
return false;
#if 1
dims.iRaysPerVoxelDim = iVoxelSuperSampling;
#else
dims.iRaysPerVoxelDim = 1;
#endif
SPar3DProjection* pParProjs;
SConeProjection* pConeProjs;
float outputScale = 1.0f;
ok = convertAstraGeometry(pVolGeom, pProjGeom,
pParProjs, pConeProjs,
outputScale);
if (pParProjs)
ok &= Par3DBP(volData.d->ptr, projData.d->ptr, dims, pParProjs, outputScale);
else
ok &= ConeBP(volData.d->ptr, projData.d->ptr, dims, pConeProjs, outputScale);
return ok;
}
}
|