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# -----------------------------------------------------------------------
# Copyright: 2010-2016, iMinds-Vision Lab, University of Antwerp
# 2013-2016, CWI, Amsterdam
#
# Contact: astra@uantwerpen.be
# Website: http://www.astra-toolbox.com/
#
# This file is part of the ASTRA Toolbox.
#
#
# The ASTRA Toolbox is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at your option) any later version.
#
# The ASTRA Toolbox is distributed in the hope that it will be useful,
# but WITHOUT ANY WARRANTY; without even the implied warranty of
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
# GNU General Public License for more details.
#
# You should have received a copy of the GNU General Public License
# along with the ASTRA Toolbox. If not, see <http://www.gnu.org/licenses/>.
#
# -----------------------------------------------------------------------
import astra
import numpy as np
import scipy.sparse.linalg
vol_geom = astra.create_vol_geom(256, 256)
proj_geom = astra.create_proj_geom('parallel', 1.0, 384, np.linspace(0,np.pi,180,False))
# As before, create a sinogram from a phantom
import scipy.io
P = scipy.io.loadmat('phantom.mat')['phantom256']
proj_id = astra.create_projector('cuda',proj_geom,vol_geom)
# construct the OpTomo object
W = astra.OpTomo(proj_id)
sinogram = W * P
sinogram = sinogram.reshape([180, 384])
import pylab
pylab.gray()
pylab.figure(1)
pylab.imshow(P)
pylab.figure(2)
pylab.imshow(sinogram)
# Run the lsqr linear solver
output = scipy.sparse.linalg.lsqr(W, sinogram.ravel(), iter_lim=150)
rec = output[0].reshape([256, 256])
pylab.figure(3)
pylab.imshow(rec)
pylab.show()
# Clean up.
astra.projector.delete(proj_id)
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